Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1607 | 3' | -58 | NC_001347.2 | + | 76176 | 0.74 | 0.45479 |
Target: 5'- uGGAGcugggcGGCCGCACgaagcgauccacguAGGCCACGUGCUc- -3' miRNA: 3'- -CCUC------UCGGCGUG--------------UCUGGUGCACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 53524 | 0.68 | 0.818096 |
Target: 5'- uGGAGAGCUGgGCccacgucuuccgGGACUacaGCGUGUCUUu -3' miRNA: 3'- -CCUCUCGGCgUG------------UCUGG---UGCACGGAA- -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 29230 | 0.71 | 0.609966 |
Target: 5'- uGGAGGGCUaCGCGGAUCGaGUGCCg- -3' miRNA: 3'- -CCUCUCGGcGUGUCUGGUgCACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 21782 | 0.66 | 0.899032 |
Target: 5'- gGGAcuuuGGCUGCuGCGGGCCGCG-GCCc- -3' miRNA: 3'- -CCUc---UCGGCG-UGUCUGGUGCaCGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 18929 | 0.73 | 0.503316 |
Target: 5'- -uGGGGCCGCACGGACCuAC-UGCCc- -3' miRNA: 3'- ccUCUCGGCGUGUCUGG-UGcACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 18457 | 0.68 | 0.798459 |
Target: 5'- cGAGGGCCuGCGCGccugccggccuuuuGACCACaUGCCg- -3' miRNA: 3'- cCUCUCGG-CGUGU--------------CUGGUGcACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 8784 | 0.67 | 0.857774 |
Target: 5'- cGGcGGAGCCGgcucagaGCGGACCACGguugauugUGCCc- -3' miRNA: 3'- -CC-UCUCGGCg------UGUCUGGUGC--------ACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 2058 | 0.67 | 0.825557 |
Target: 5'- cGGGAGCCGUGgGGuCCGCuguaccuGUGCCUc -3' miRNA: 3'- cCUCUCGGCGUgUCuGGUG-------CACGGAa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 987 | 0.66 | 0.879333 |
Target: 5'- gGGAGcGCCGUcacaGCGGGCaCugGUGCg-- -3' miRNA: 3'- -CCUCuCGGCG----UGUCUG-GugCACGgaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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