Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1607 | 3' | -58 | NC_001347.2 | + | 152023 | 0.66 | 0.885443 |
|
Target: 5'- aGGAGAGCCggcaaagaagaggGCGCGGAaaCCAcCGUcgGCCg- -3' miRNA: 3'- -CCUCUCGG-------------CGUGUCU--GGU-GCA--CGGaa -5' |
|||||||
| 1607 | 3' | -58 | NC_001347.2 | + | 165544 | 0.66 | 0.879333 |
|
Target: 5'- -aAGGGCCGCG-AGAgCGCGUGCa-- -3' miRNA: 3'- ccUCUCGGCGUgUCUgGUGCACGgaa -5' |
|||||||
| 1607 | 3' | -58 | NC_001347.2 | + | 987 | 0.66 | 0.879333 |
|
Target: 5'- gGGAGcGCCGUcacaGCGGGCaCugGUGCg-- -3' miRNA: 3'- -CCUCuCGGCG----UGUCUG-GugCACGgaa -5' |
|||||||
| 1607 | 3' | -58 | NC_001347.2 | + | 158677 | 0.66 | 0.878644 |
|
Target: 5'- cGGGGcGCgCGCugguuaaACAGACCGCcUGCCa- -3' miRNA: 3'- -CCUCuCG-GCG-------UGUCUGGUGcACGGaa -5' |
|||||||
| 1607 | 3' | -58 | NC_001347.2 | + | 135457 | 0.67 | 0.834493 |
|
Target: 5'- aGGGAGCCGcCGCgAGACC-CGgaaGCCg- -3' miRNA: 3'- cCUCUCGGC-GUG-UCUGGuGCa--CGGaa -5' |
|||||||
| 1607 | 3' | -58 | NC_001347.2 | + | 85551 | 0.67 | 0.842435 |
|
Target: 5'- aGAGcGCCGCgucgugcgaaaGCAGAaacUCGCGUGCCg- -3' miRNA: 3'- cCUCuCGGCG-----------UGUCU---GGUGCACGGaa -5' |
|||||||
| 1607 | 3' | -58 | NC_001347.2 | + | 8784 | 0.67 | 0.857774 |
|
Target: 5'- cGGcGGAGCCGgcucagaGCGGACCACGguugauugUGCCc- -3' miRNA: 3'- -CC-UCUCGGCg------UGUCUGGUGC--------ACGGaa -5' |
|||||||
| 1607 | 3' | -58 | NC_001347.2 | + | 2058 | 0.67 | 0.825557 |
|
Target: 5'- cGGGAGCCGUGgGGuCCGCuguaccuGUGCCUc -3' miRNA: 3'- cCUCUCGGCGUgUCuGGUG-------CACGGAa -5' |
|||||||
| 1607 | 3' | -58 | NC_001347.2 | + | 156123 | 1.07 | 0.003349 |
|
Target: 5'- gGGAGAGCCGCACAGACCACGUGCCUUg -3' miRNA: 3'- -CCUCUCGGCGUGUCUGGUGCACGGAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home