miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1607 5' -52.7 NC_001347.2 + 31436 0.66 0.99283
Target:  5'- ---uAACGCUGGCUcaCGCCGgcaacCCCu -3'
miRNA:   3'- auuuUUGUGACCGAc-GCGGCaga--GGG- -5'
1607 5' -52.7 NC_001347.2 + 40458 0.66 0.99283
Target:  5'- ---cGACGCUGcCUGCGCacugccggugcgUGUCgUCCCa -3'
miRNA:   3'- auuuUUGUGACcGACGCG------------GCAG-AGGG- -5'
1607 5' -52.7 NC_001347.2 + 142263 0.66 0.99283
Target:  5'- -cGAGGCGCUGGCcGCGUCG-CUg-- -3'
miRNA:   3'- auUUUUGUGACCGaCGCGGCaGAggg -5'
1607 5' -52.7 NC_001347.2 + 173353 0.66 0.99283
Target:  5'- --cAGACGCUGcucaaUUGCGCCGUCaCCa -3'
miRNA:   3'- auuUUUGUGACc----GACGCGGCAGaGGg -5'
1607 5' -52.7 NC_001347.2 + 20976 0.66 0.99273
Target:  5'- aGAAGAUAgUGGUgacguugUGCGCCuUCUCUa -3'
miRNA:   3'- aUUUUUGUgACCG-------ACGCGGcAGAGGg -5'
1607 5' -52.7 NC_001347.2 + 87258 0.66 0.989333
Target:  5'- uUGGGGAUGC-GGC-GCGCCGUa-CCCg -3'
miRNA:   3'- -AUUUUUGUGaCCGaCGCGGCAgaGGG- -5'
1607 5' -52.7 NC_001347.2 + 75767 0.66 0.989333
Target:  5'- gAAAAACGCcgucucgucGUUGcCGCCGgugCUCCCg -3'
miRNA:   3'- aUUUUUGUGac-------CGAC-GCGGCa--GAGGG- -5'
1607 5' -52.7 NC_001347.2 + 20472 0.66 0.989333
Target:  5'- --cAGGCGCaggaGGCUaacGCGCUGcugcUCUCCCg -3'
miRNA:   3'- auuUUUGUGa---CCGA---CGCGGC----AGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 103910 0.66 0.98791
Target:  5'- ------aACUGGCUGCGCUcg--CCCu -3'
miRNA:   3'- auuuuugUGACCGACGCGGcagaGGG- -5'
1607 5' -52.7 NC_001347.2 + 127410 0.66 0.98791
Target:  5'- -uGAuuUAC-GGCUGCGCgacggCGUCUCCg -3'
miRNA:   3'- auUUuuGUGaCCGACGCG-----GCAGAGGg -5'
1607 5' -52.7 NC_001347.2 + 171302 0.66 0.98791
Target:  5'- gUGAGcAGCGCUacucgcuguuugGGCgGC-CUGUCUCCCg -3'
miRNA:   3'- -AUUU-UUGUGA------------CCGaCGcGGCAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 159278 0.66 0.98791
Target:  5'- -cGAAACugguGCUGGCgGCGCCGggcgCCa -3'
miRNA:   3'- auUUUUG----UGACCGaCGCGGCaga-GGg -5'
1607 5' -52.7 NC_001347.2 + 127754 0.66 0.986345
Target:  5'- cAAGGGCAaacuggGGCUGCgcaucaucacGCCGUUcCCCg -3'
miRNA:   3'- aUUUUUGUga----CCGACG----------CGGCAGaGGG- -5'
1607 5' -52.7 NC_001347.2 + 222861 0.67 0.984628
Target:  5'- gGAGAugGCGCUG--UGCGUCGUCUCUUc -3'
miRNA:   3'- aUUUU--UGUGACcgACGCGGCAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 65880 0.67 0.984628
Target:  5'- ----cACGCUGGCggGCcgaccgccGCCGccCUCCCu -3'
miRNA:   3'- auuuuUGUGACCGa-CG--------CGGCa-GAGGG- -5'
1607 5' -52.7 NC_001347.2 + 90217 0.67 0.982753
Target:  5'- aAAAGACgGCgUGGCgGCGUCGUUUUUCg -3'
miRNA:   3'- aUUUUUG-UG-ACCGaCGCGGCAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 170082 0.67 0.978491
Target:  5'- -------gUUGGCgucccgaGuCGCCGUCUCCCg -3'
miRNA:   3'- auuuuuguGACCGa------C-GCGGCAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 36407 0.67 0.97609
Target:  5'- ------gGCUGGC-GUGCUGUUUUCCg -3'
miRNA:   3'- auuuuugUGACCGaCGCGGCAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 157131 0.68 0.973497
Target:  5'- aUGAGuucCACcaGGCucUGCGCCGUCUCUUc -3'
miRNA:   3'- -AUUUuu-GUGa-CCG--ACGCGGCAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 157576 0.68 0.964506
Target:  5'- ---cGACACcgacuaccuGCUGCGCCGUCUgcggcucuaCCCg -3'
miRNA:   3'- auuuUUGUGac-------CGACGCGGCAGA---------GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.