Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1607 | 5' | -52.7 | NC_001347.2 | + | 182208 | 0.68 | 0.964506 |
Target: 5'- -cGGGugGCgGGCUGCGUCGcCUUCg -3' miRNA: 3'- auUUUugUGaCCGACGCGGCaGAGGg -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 84635 | 0.69 | 0.953569 |
Target: 5'- ----cGCGgUGGCUGCcgcuacuacuGUCGUUUCCCc -3' miRNA: 3'- auuuuUGUgACCGACG----------CGGCAGAGGG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 38423 | 0.69 | 0.940561 |
Target: 5'- -----cCGCUGGCgGCGaCGUCgUCCCc -3' miRNA: 3'- auuuuuGUGACCGaCGCgGCAG-AGGG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 39091 | 0.7 | 0.93575 |
Target: 5'- -----uCAuCUGGCUGCGCggCGUCaCCCg -3' miRNA: 3'- auuuuuGU-GACCGACGCG--GCAGaGGG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 175040 | 0.7 | 0.93575 |
Target: 5'- ----cAUACUGGUgaacgagagcgGCGCCGUCUUCg -3' miRNA: 3'- auuuuUGUGACCGa----------CGCGGCAGAGGg -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 99382 | 0.7 | 0.93575 |
Target: 5'- -cAAAugGC-GGCgugGCGUCaGUCUCCCc -3' miRNA: 3'- auUUUugUGaCCGa--CGCGG-CAGAGGG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 35980 | 0.7 | 0.90808 |
Target: 5'- aGGGGAUgugauCUGGCUGCGUugCGUC-CCCg -3' miRNA: 3'- aUUUUUGu----GACCGACGCG--GCAGaGGG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 79345 | 0.7 | 0.90808 |
Target: 5'- -cGGAGCACgGGCUGC-UgGUCUCCa -3' miRNA: 3'- auUUUUGUGaCCGACGcGgCAGAGGg -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 27129 | 0.71 | 0.901827 |
Target: 5'- ----uGCACcacggccuuaugUGGCUGCGCCGUUUUgCu -3' miRNA: 3'- auuuuUGUG------------ACCGACGCGGCAGAGgG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 200611 | 0.72 | 0.867106 |
Target: 5'- ----cGCGCgucgGGCUgcGCGCCGUCgagaCCCu -3' miRNA: 3'- auuuuUGUGa---CCGA--CGCGGCAGa---GGG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 93384 | 0.72 | 0.867106 |
Target: 5'- gAAAcGCugUGGCaacGCGCCGcCgUCCCg -3' miRNA: 3'- aUUUuUGugACCGa--CGCGGCaG-AGGG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 156633 | 0.72 | 0.835469 |
Target: 5'- -----cCGCUGGCgGCGCCG-CUgCCg -3' miRNA: 3'- auuuuuGUGACCGaCGCGGCaGAgGG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 111260 | 0.73 | 0.818502 |
Target: 5'- -cGGAGCAacgucaUGcGCgGCGCCGUCUCCg -3' miRNA: 3'- auUUUUGUg-----AC-CGaCGCGGCAGAGGg -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 31391 | 0.73 | 0.800851 |
Target: 5'- -uGAGGCGgUGGCUGCGCCuccucGUCggCCUg -3' miRNA: 3'- auUUUUGUgACCGACGCGG-----CAGa-GGG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 13848 | 0.74 | 0.782583 |
Target: 5'- --cGGGCACUcGGCUGUGCCuGUCaUCCa -3' miRNA: 3'- auuUUUGUGA-CCGACGCGG-CAG-AGGg -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 169186 | 0.75 | 0.704798 |
Target: 5'- -cGAGACGCUgGGCUGCGucaagaCCGUCUCgCu -3' miRNA: 3'- auUUUUGUGA-CCGACGC------GGCAGAGgG- -5' |
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1607 | 5' | -52.7 | NC_001347.2 | + | 156159 | 1.11 | 0.00652 |
Target: 5'- uUAAAAACACUGGCUGCGCCGUCUCCCu -3' miRNA: 3'- -AUUUUUGUGACCGACGCGGCAGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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