miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1607 5' -52.7 NC_001347.2 + 182208 0.68 0.964506
Target:  5'- -cGGGugGCgGGCUGCGUCGcCUUCg -3'
miRNA:   3'- auUUUugUGaCCGACGCGGCaGAGGg -5'
1607 5' -52.7 NC_001347.2 + 84635 0.69 0.953569
Target:  5'- ----cGCGgUGGCUGCcgcuacuacuGUCGUUUCCCc -3'
miRNA:   3'- auuuuUGUgACCGACG----------CGGCAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 38423 0.69 0.940561
Target:  5'- -----cCGCUGGCgGCGaCGUCgUCCCc -3'
miRNA:   3'- auuuuuGUGACCGaCGCgGCAG-AGGG- -5'
1607 5' -52.7 NC_001347.2 + 39091 0.7 0.93575
Target:  5'- -----uCAuCUGGCUGCGCggCGUCaCCCg -3'
miRNA:   3'- auuuuuGU-GACCGACGCG--GCAGaGGG- -5'
1607 5' -52.7 NC_001347.2 + 175040 0.7 0.93575
Target:  5'- ----cAUACUGGUgaacgagagcgGCGCCGUCUUCg -3'
miRNA:   3'- auuuuUGUGACCGa----------CGCGGCAGAGGg -5'
1607 5' -52.7 NC_001347.2 + 99382 0.7 0.93575
Target:  5'- -cAAAugGC-GGCgugGCGUCaGUCUCCCc -3'
miRNA:   3'- auUUUugUGaCCGa--CGCGG-CAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 35980 0.7 0.90808
Target:  5'- aGGGGAUgugauCUGGCUGCGUugCGUC-CCCg -3'
miRNA:   3'- aUUUUUGu----GACCGACGCG--GCAGaGGG- -5'
1607 5' -52.7 NC_001347.2 + 79345 0.7 0.90808
Target:  5'- -cGGAGCACgGGCUGC-UgGUCUCCa -3'
miRNA:   3'- auUUUUGUGaCCGACGcGgCAGAGGg -5'
1607 5' -52.7 NC_001347.2 + 27129 0.71 0.901827
Target:  5'- ----uGCACcacggccuuaugUGGCUGCGCCGUUUUgCu -3'
miRNA:   3'- auuuuUGUG------------ACCGACGCGGCAGAGgG- -5'
1607 5' -52.7 NC_001347.2 + 200611 0.72 0.867106
Target:  5'- ----cGCGCgucgGGCUgcGCGCCGUCgagaCCCu -3'
miRNA:   3'- auuuuUGUGa---CCGA--CGCGGCAGa---GGG- -5'
1607 5' -52.7 NC_001347.2 + 93384 0.72 0.867106
Target:  5'- gAAAcGCugUGGCaacGCGCCGcCgUCCCg -3'
miRNA:   3'- aUUUuUGugACCGa--CGCGGCaG-AGGG- -5'
1607 5' -52.7 NC_001347.2 + 156633 0.72 0.835469
Target:  5'- -----cCGCUGGCgGCGCCG-CUgCCg -3'
miRNA:   3'- auuuuuGUGACCGaCGCGGCaGAgGG- -5'
1607 5' -52.7 NC_001347.2 + 111260 0.73 0.818502
Target:  5'- -cGGAGCAacgucaUGcGCgGCGCCGUCUCCg -3'
miRNA:   3'- auUUUUGUg-----AC-CGaCGCGGCAGAGGg -5'
1607 5' -52.7 NC_001347.2 + 31391 0.73 0.800851
Target:  5'- -uGAGGCGgUGGCUGCGCCuccucGUCggCCUg -3'
miRNA:   3'- auUUUUGUgACCGACGCGG-----CAGa-GGG- -5'
1607 5' -52.7 NC_001347.2 + 13848 0.74 0.782583
Target:  5'- --cGGGCACUcGGCUGUGCCuGUCaUCCa -3'
miRNA:   3'- auuUUUGUGA-CCGACGCGG-CAG-AGGg -5'
1607 5' -52.7 NC_001347.2 + 169186 0.75 0.704798
Target:  5'- -cGAGACGCUgGGCUGCGucaagaCCGUCUCgCu -3'
miRNA:   3'- auUUUUGUGA-CCGACGC------GGCAGAGgG- -5'
1607 5' -52.7 NC_001347.2 + 156159 1.11 0.00652
Target:  5'- uUAAAAACACUGGCUGCGCCGUCUCCCu -3'
miRNA:   3'- -AUUUUUGUGACCGACGCGGCAGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.