miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1607 5' -52.7 NC_001347.2 + 13848 0.74 0.782583
Target:  5'- --cGGGCACUcGGCUGUGCCuGUCaUCCa -3'
miRNA:   3'- auuUUUGUGA-CCGACGCGG-CAG-AGGg -5'
1607 5' -52.7 NC_001347.2 + 20472 0.66 0.989333
Target:  5'- --cAGGCGCaggaGGCUaacGCGCUGcugcUCUCCCg -3'
miRNA:   3'- auuUUUGUGa---CCGA---CGCGGC----AGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 20976 0.66 0.99273
Target:  5'- aGAAGAUAgUGGUgacguugUGCGCCuUCUCUa -3'
miRNA:   3'- aUUUUUGUgACCG-------ACGCGGcAGAGGg -5'
1607 5' -52.7 NC_001347.2 + 27129 0.71 0.901827
Target:  5'- ----uGCACcacggccuuaugUGGCUGCGCCGUUUUgCu -3'
miRNA:   3'- auuuuUGUG------------ACCGACGCGGCAGAGgG- -5'
1607 5' -52.7 NC_001347.2 + 31391 0.73 0.800851
Target:  5'- -uGAGGCGgUGGCUGCGCCuccucGUCggCCUg -3'
miRNA:   3'- auUUUUGUgACCGACGCGG-----CAGa-GGG- -5'
1607 5' -52.7 NC_001347.2 + 31436 0.66 0.99283
Target:  5'- ---uAACGCUGGCUcaCGCCGgcaacCCCu -3'
miRNA:   3'- auuuUUGUGACCGAc-GCGGCaga--GGG- -5'
1607 5' -52.7 NC_001347.2 + 35980 0.7 0.90808
Target:  5'- aGGGGAUgugauCUGGCUGCGUugCGUC-CCCg -3'
miRNA:   3'- aUUUUUGu----GACCGACGCG--GCAGaGGG- -5'
1607 5' -52.7 NC_001347.2 + 36407 0.67 0.97609
Target:  5'- ------gGCUGGC-GUGCUGUUUUCCg -3'
miRNA:   3'- auuuuugUGACCGaCGCGGCAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 38423 0.69 0.940561
Target:  5'- -----cCGCUGGCgGCGaCGUCgUCCCc -3'
miRNA:   3'- auuuuuGUGACCGaCGCgGCAG-AGGG- -5'
1607 5' -52.7 NC_001347.2 + 39091 0.7 0.93575
Target:  5'- -----uCAuCUGGCUGCGCggCGUCaCCCg -3'
miRNA:   3'- auuuuuGU-GACCGACGCG--GCAGaGGG- -5'
1607 5' -52.7 NC_001347.2 + 40458 0.66 0.99283
Target:  5'- ---cGACGCUGcCUGCGCacugccggugcgUGUCgUCCCa -3'
miRNA:   3'- auuuUUGUGACcGACGCG------------GCAG-AGGG- -5'
1607 5' -52.7 NC_001347.2 + 65880 0.67 0.984628
Target:  5'- ----cACGCUGGCggGCcgaccgccGCCGccCUCCCu -3'
miRNA:   3'- auuuuUGUGACCGa-CG--------CGGCa-GAGGG- -5'
1607 5' -52.7 NC_001347.2 + 75767 0.66 0.989333
Target:  5'- gAAAAACGCcgucucgucGUUGcCGCCGgugCUCCCg -3'
miRNA:   3'- aUUUUUGUGac-------CGAC-GCGGCa--GAGGG- -5'
1607 5' -52.7 NC_001347.2 + 79345 0.7 0.90808
Target:  5'- -cGGAGCACgGGCUGC-UgGUCUCCa -3'
miRNA:   3'- auUUUUGUGaCCGACGcGgCAGAGGg -5'
1607 5' -52.7 NC_001347.2 + 84635 0.69 0.953569
Target:  5'- ----cGCGgUGGCUGCcgcuacuacuGUCGUUUCCCc -3'
miRNA:   3'- auuuuUGUgACCGACG----------CGGCAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 87258 0.66 0.989333
Target:  5'- uUGGGGAUGC-GGC-GCGCCGUa-CCCg -3'
miRNA:   3'- -AUUUUUGUGaCCGaCGCGGCAgaGGG- -5'
1607 5' -52.7 NC_001347.2 + 90217 0.67 0.982753
Target:  5'- aAAAGACgGCgUGGCgGCGUCGUUUUUCg -3'
miRNA:   3'- aUUUUUG-UG-ACCGaCGCGGCAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 93384 0.72 0.867106
Target:  5'- gAAAcGCugUGGCaacGCGCCGcCgUCCCg -3'
miRNA:   3'- aUUUuUGugACCGa--CGCGGCaG-AGGG- -5'
1607 5' -52.7 NC_001347.2 + 99382 0.7 0.93575
Target:  5'- -cAAAugGC-GGCgugGCGUCaGUCUCCCc -3'
miRNA:   3'- auUUUugUGaCCGa--CGCGG-CAGAGGG- -5'
1607 5' -52.7 NC_001347.2 + 103910 0.66 0.98791
Target:  5'- ------aACUGGCUGCGCUcg--CCCu -3'
miRNA:   3'- auuuuugUGACCGACGCGGcagaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.