miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16071 3' -50 NC_004065.1 + 108927 0.66 0.999535
Target:  5'- --cGUGGACCAGgUGAC-GGUgguCCa -3'
miRNA:   3'- uaaUACCUGGUCaGCUGaCCAaguGG- -5'
16071 3' -50 NC_004065.1 + 107197 0.66 0.999535
Target:  5'- ----gGGAgCcGUCGACUGauaccucgucccGUUCGCCa -3'
miRNA:   3'- uaauaCCUgGuCAGCUGAC------------CAAGUGG- -5'
16071 3' -50 NC_004065.1 + 111198 0.66 0.999535
Target:  5'- --gGUGGAaaccaaCAGUCGACacGcUCGCCa -3'
miRNA:   3'- uaaUACCUg-----GUCAGCUGacCaAGUGG- -5'
16071 3' -50 NC_004065.1 + 184897 0.66 0.999424
Target:  5'- --cGUGGACgAGUCcGACgag-UCGCCu -3'
miRNA:   3'- uaaUACCUGgUCAG-CUGaccaAGUGG- -5'
16071 3' -50 NC_004065.1 + 135268 0.66 0.999424
Target:  5'- ----aGGACCGGcUGGCcaGGUUCGCg -3'
miRNA:   3'- uaauaCCUGGUCaGCUGa-CCAAGUGg -5'
16071 3' -50 NC_004065.1 + 159743 0.66 0.99929
Target:  5'- ----gGGGCCAGUCaGCUGG--CACa -3'
miRNA:   3'- uaauaCCUGGUCAGcUGACCaaGUGg -5'
16071 3' -50 NC_004065.1 + 98443 0.66 0.998943
Target:  5'- ----cGGAacaaCCAGUCGGacgacCUGGUggUCGCCc -3'
miRNA:   3'- uaauaCCU----GGUCAGCU-----GACCA--AGUGG- -5'
16071 3' -50 NC_004065.1 + 216692 0.67 0.99872
Target:  5'- --cGUGGGCgAGUacucgaggUGACgGGUUCAUCu -3'
miRNA:   3'- uaaUACCUGgUCA--------GCUGaCCAAGUGG- -5'
16071 3' -50 NC_004065.1 + 137215 0.67 0.99872
Target:  5'- --aAUGGGCguGguuaccuagguuUCGA-UGGUUCACCg -3'
miRNA:   3'- uaaUACCUGguC------------AGCUgACCAAGUGG- -5'
16071 3' -50 NC_004065.1 + 169176 0.67 0.99872
Target:  5'- ----cGGGCCGGucUCGAUgugaGuGUUCGCCg -3'
miRNA:   3'- uaauaCCUGGUC--AGCUGa---C-CAAGUGG- -5'
16071 3' -50 NC_004065.1 + 131433 0.67 0.99872
Target:  5'- ----cGGACCGGcgucaagagaCGGCUGGgcccgUUCGCCg -3'
miRNA:   3'- uaauaCCUGGUCa---------GCUGACC-----AAGUGG- -5'
16071 3' -50 NC_004065.1 + 188036 0.67 0.998153
Target:  5'- --gGUGGAUCAcUCGAUaccuGUUCACCg -3'
miRNA:   3'- uaaUACCUGGUcAGCUGac--CAAGUGG- -5'
16071 3' -50 NC_004065.1 + 138952 0.67 0.998153
Target:  5'- ----gGGGCCAGUCG-CUGcGcgUCugCg -3'
miRNA:   3'- uaauaCCUGGUCAGCuGAC-Ca-AGugG- -5'
16071 3' -50 NC_004065.1 + 147643 0.67 0.998153
Target:  5'- ----cGGGCgAGaUCGACUGcgUCGCCa -3'
miRNA:   3'- uaauaCCUGgUC-AGCUGACcaAGUGG- -5'
16071 3' -50 NC_004065.1 + 23628 0.67 0.998153
Target:  5'- --gGUGGACgGG-CGGCUGGccUCggGCCg -3'
miRNA:   3'- uaaUACCUGgUCaGCUGACCa-AG--UGG- -5'
16071 3' -50 NC_004065.1 + 49656 0.67 0.997799
Target:  5'- --gGUGGACCAGUuucccgUGGC-GGUgcCGCCg -3'
miRNA:   3'- uaaUACCUGGUCA------GCUGaCCAa-GUGG- -5'
16071 3' -50 NC_004065.1 + 118819 0.67 0.997389
Target:  5'- -gUGUGGcgaGCguGUCGACUguuGGUUucCACCg -3'
miRNA:   3'- uaAUACC---UGguCAGCUGA---CCAA--GUGG- -5'
16071 3' -50 NC_004065.1 + 2505 0.67 0.997389
Target:  5'- --cAUGGACCu-UUGAaUGGUUCAUCa -3'
miRNA:   3'- uaaUACCUGGucAGCUgACCAAGUGG- -5'
16071 3' -50 NC_004065.1 + 94379 0.68 0.996918
Target:  5'- cGUUAcGG-CCGcggcgagcuGUCGGCUGGUggCGCCg -3'
miRNA:   3'- -UAAUaCCuGGU---------CAGCUGACCAa-GUGG- -5'
16071 3' -50 NC_004065.1 + 227501 0.68 0.996379
Target:  5'- ----cGGACCAGcCGAC-GGUUgACg -3'
miRNA:   3'- uaauaCCUGGUCaGCUGaCCAAgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.