miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16071 5' -49.3 NC_004065.1 + 65352 0.66 0.999673
Target:  5'- gCgGGUGggUCgGUCGGaucGACCUGGGc-- -3'
miRNA:   3'- -GgCCACuuGG-UAGCU---UUGGAUCCauu -5'
16071 5' -49.3 NC_004065.1 + 109542 0.66 0.999673
Target:  5'- cCCGGgcacGAcACCGUCGucagcGACCUcgAGGUGg -3'
miRNA:   3'- -GGCCa---CU-UGGUAGCu----UUGGA--UCCAUu -5'
16071 5' -49.3 NC_004065.1 + 191440 0.66 0.99959
Target:  5'- cUCGGUGAcgACCGaggaguccUCGAcGCCgAGGUGc -3'
miRNA:   3'- -GGCCACU--UGGU--------AGCUuUGGaUCCAUu -5'
16071 5' -49.3 NC_004065.1 + 219334 0.66 0.99959
Target:  5'- gCGGUGAGCCAucUCGguGCUguacGGGa-- -3'
miRNA:   3'- gGCCACUUGGU--AGCuuUGGa---UCCauu -5'
16071 5' -49.3 NC_004065.1 + 79296 0.66 0.999491
Target:  5'- -gGGcGAGCUGUCGAcGGCCUGGGc-- -3'
miRNA:   3'- ggCCaCUUGGUAGCU-UUGGAUCCauu -5'
16071 5' -49.3 NC_004065.1 + 184865 0.66 0.999491
Target:  5'- gUCGGUGAACCGgugUGGGACCgAGa--- -3'
miRNA:   3'- -GGCCACUUGGUa--GCUUUGGaUCcauu -5'
16071 5' -49.3 NC_004065.1 + 129897 0.67 0.999226
Target:  5'- gCGGcGGACCcugAUCGggGCCUGGcGg-- -3'
miRNA:   3'- gGCCaCUUGG---UAGCuuUGGAUC-Cauu -5'
16071 5' -49.3 NC_004065.1 + 53819 0.67 0.998852
Target:  5'- gCCGGUGAACCGUC-AGACuCUGa---- -3'
miRNA:   3'- -GGCCACUUGGUAGcUUUG-GAUccauu -5'
16071 5' -49.3 NC_004065.1 + 182452 0.67 0.998852
Target:  5'- cCUGGUGAcguaGCC-UCuGGGCCUGGGUc- -3'
miRNA:   3'- -GGCCACU----UGGuAGcUUUGGAUCCAuu -5'
16071 5' -49.3 NC_004065.1 + 207326 0.67 0.998612
Target:  5'- aCGGUGGACCcUgGAuuuGAUCUGGGa-- -3'
miRNA:   3'- gGCCACUUGGuAgCU---UUGGAUCCauu -5'
16071 5' -49.3 NC_004065.1 + 176563 0.67 0.998612
Target:  5'- gCUGGUGAGCCAUCauucccACgCUGGGa-- -3'
miRNA:   3'- -GGCCACUUGGUAGcuu---UG-GAUCCauu -5'
16071 5' -49.3 NC_004065.1 + 146598 0.68 0.998332
Target:  5'- -gGGUG-GCCAUCGggGCCgucggcGGGg-- -3'
miRNA:   3'- ggCCACuUGGUAGCuuUGGa-----UCCauu -5'
16071 5' -49.3 NC_004065.1 + 173791 0.68 0.998005
Target:  5'- uCCGGUcGACCGagGGAaacuGCCUAGGa-- -3'
miRNA:   3'- -GGCCAcUUGGUagCUU----UGGAUCCauu -5'
16071 5' -49.3 NC_004065.1 + 136079 0.68 0.997627
Target:  5'- cUCGGaGAACggcaAUCGGGACCUGGGc-- -3'
miRNA:   3'- -GGCCaCUUGg---UAGCUUUGGAUCCauu -5'
16071 5' -49.3 NC_004065.1 + 136327 0.68 0.99719
Target:  5'- uCCGGUGAGCCGagGAggguAGCC-GGGa-- -3'
miRNA:   3'- -GGCCACUUGGUagCU----UUGGaUCCauu -5'
16071 5' -49.3 NC_004065.1 + 63313 0.69 0.995463
Target:  5'- aUCGGUGcuuuccCCAUCGAggUCgAGGUAGa -3'
miRNA:   3'- -GGCCACuu----GGUAGCUuuGGaUCCAUU- -5'
16071 5' -49.3 NC_004065.1 + 136431 0.69 0.993891
Target:  5'- cCCGGUGAGCCGaggUCGGuaggcgggAAgCUGGGg-- -3'
miRNA:   3'- -GGCCACUUGGU---AGCU--------UUgGAUCCauu -5'
16071 5' -49.3 NC_004065.1 + 170114 0.7 0.988016
Target:  5'- cUCGGUGAACCugcCGGGAUC-GGGUAu -3'
miRNA:   3'- -GGCCACUUGGua-GCUUUGGaUCCAUu -5'
16071 5' -49.3 NC_004065.1 + 47633 0.7 0.986438
Target:  5'- aCGGUGGAUCGUUGAucCCgauGGUGGu -3'
miRNA:   3'- gGCCACUUGGUAGCUuuGGau-CCAUU- -5'
16071 5' -49.3 NC_004065.1 + 45669 0.71 0.984706
Target:  5'- cCCGG-GAGCgAUCGAAaACCgcGGUAGc -3'
miRNA:   3'- -GGCCaCUUGgUAGCUU-UGGauCCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.