Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16072 | 3' | -43 | NC_004065.1 | + | 104869 | 0.68 | 1 |
|
Target: 5'- cUAUCGAaAAAcgUUUUGAUGUCCGGc- -3' miRNA: 3'- -AUAGCUaUUUa-AAAGCUGUAGGCCaa -5' |
|||||||
| 16072 | 3' | -43 | NC_004065.1 | + | 168890 | 0.67 | 1 |
|
Target: 5'- aGUCuggAGGUgcUUGACAUCCGGUg -3' miRNA: 3'- aUAGcuaUUUAaaAGCUGUAGGCCAa -5' |
|||||||
| 16072 | 3' | -43 | NC_004065.1 | + | 102580 | 0.66 | 1 |
|
Target: 5'- gAUCGAcgAGAUUUUgcuccgcgacgaagCGACGUCUGGg- -3' miRNA: 3'- aUAGCUa-UUUAAAA--------------GCUGUAGGCCaa -5' |
|||||||
| 16072 | 3' | -43 | NC_004065.1 | + | 173440 | 0.66 | 1 |
|
Target: 5'- ---gGGUGAcg-UUCGACGUaCCGGUg -3' miRNA: 3'- auagCUAUUuaaAAGCUGUA-GGCCAa -5' |
|||||||
| 16072 | 3' | -43 | NC_004065.1 | + | 228364 | 0.67 | 1 |
|
Target: 5'- aUGUCGuAUAuGUUcUCGAaGUCCGGUa -3' miRNA: 3'- -AUAGC-UAUuUAAaAGCUgUAGGCCAa -5' |
|||||||
| 16072 | 3' | -43 | NC_004065.1 | + | 124657 | 0.66 | 1 |
|
Target: 5'- --cCGAaGGAgaaaUCGACGUCCGGa- -3' miRNA: 3'- auaGCUaUUUaaa-AGCUGUAGGCCaa -5' |
|||||||
| 16072 | 3' | -43 | NC_004065.1 | + | 104526 | 0.69 | 0.999999 |
|
Target: 5'- cGUCGucUAGAgUUUCGACGUCCuccaGGUUg -3' miRNA: 3'- aUAGCu-AUUUaAAAGCUGUAGG----CCAA- -5' |
|||||||
| 16072 | 3' | -43 | NC_004065.1 | + | 137057 | 0.78 | 0.984445 |
|
Target: 5'- gAUCGAUAAccUUUCaACAUCCGGUUg -3' miRNA: 3'- aUAGCUAUUuaAAAGcUGUAGGCCAA- -5' |
|||||||
| 16072 | 3' | -43 | NC_004065.1 | + | 92929 | 1.06 | 0.115791 |
|
Target: 5'- uUAUCGAUAAAUUUUCGACAUCCGGUUg -3' miRNA: 3'- -AUAGCUAUUUAAAAGCUGUAGGCCAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home