Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16072 | 5' | -45.1 | NC_004065.1 | + | 3280 | 0.67 | 0.999999 |
Target: 5'- gUCGGCUGG-UGUUGGugacGGUuguacUGUCGAg -3' miRNA: 3'- -AGUUGGCCuACAACUuu--CCA-----AUAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 34651 | 0.66 | 1 |
Target: 5'- cUCGGCCGucacGGUGUccaGGAAGGccGUCGAg -3' miRNA: 3'- -AGUUGGC----CUACAa--CUUUCCaaUAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 63408 | 0.68 | 0.999994 |
Target: 5'- gCGACUGGAUGagcuucUUGggGGGUUAcacccagugCGAc -3' miRNA: 3'- aGUUGGCCUAC------AACuuUCCAAUa--------GCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 67654 | 0.66 | 1 |
Target: 5'- gUCGAgCGGGUGUccgaaGAGGGGUUuucccgguccgAUCGGc -3' miRNA: 3'- -AGUUgGCCUACAa----CUUUCCAA-----------UAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 77762 | 0.68 | 0.999996 |
Target: 5'- cUCGACCuGGAUGUccuccGAcAGGUUaugGUCGGu -3' miRNA: 3'- -AGUUGG-CCUACAa----CUuUCCAA---UAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 82419 | 0.68 | 0.999992 |
Target: 5'- aCGACCGcGGUGUUGGucuGGUccugCGAg -3' miRNA: 3'- aGUUGGC-CUACAACUuu-CCAaua-GCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 92964 | 1.11 | 0.039195 |
Target: 5'- gUCAACCGGAUGUUGAAAGGUUAUCGAu -3' miRNA: 3'- -AGUUGGCCUACAACUUUCCAAUAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 113871 | 0.73 | 0.997922 |
Target: 5'- gCGACUGGAUaGUgGGGAGGUUcgCGGc -3' miRNA: 3'- aGUUGGCCUA-CAaCUUUCCAAuaGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 120598 | 0.68 | 0.999997 |
Target: 5'- cUCGGCCGGGUGcac-GAGG--AUCGAg -3' miRNA: 3'- -AGUUGGCCUACaacuUUCCaaUAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 137091 | 0.8 | 0.905734 |
Target: 5'- gUCAACCGGAUGUcGAAAauUUAUCGAu -3' miRNA: 3'- -AGUUGGCCUACAaCUUUccAAUAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 176450 | 0.73 | 0.998566 |
Target: 5'- gUCGAuCUGGGUGUcggGGAGGGaUGUCGGg -3' miRNA: 3'- -AGUU-GGCCUACAa--CUUUCCaAUAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 185046 | 0.68 | 0.999989 |
Target: 5'- cUCGGCCGGG-GgaGAAcGGGUcgcUGUCGAa -3' miRNA: 3'- -AGUUGGCCUaCaaCUU-UCCA---AUAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 200573 | 0.69 | 0.999971 |
Target: 5'- -gAACaCGGGUGgaGAAGGGUgGUCGc -3' miRNA: 3'- agUUG-GCCUACaaCUUUCCAaUAGCu -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 206774 | 0.66 | 1 |
Target: 5'- gUCAACCGccguUGgcGGAGGGagggUGUCGGg -3' miRNA: 3'- -AGUUGGCcu--ACaaCUUUCCa---AUAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 211667 | 0.7 | 0.999947 |
Target: 5'- uUCGugCGGAUcGUUcGAGGGGgagccGUCGAa -3' miRNA: 3'- -AGUugGCCUA-CAA-CUUUCCaa---UAGCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 214686 | 0.67 | 0.999999 |
Target: 5'- gUCGcGCCGGAUGUUGAcgAAGaagUAUaCGAa -3' miRNA: 3'- -AGU-UGGCCUACAACU--UUCca-AUA-GCU- -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 227998 | 0.66 | 1 |
Target: 5'- cCAGCCGGA------GAGGUUGUCa- -3' miRNA: 3'- aGUUGGCCUacaacuUUCCAAUAGcu -5' |
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16072 | 5' | -45.1 | NC_004065.1 | + | 229653 | 0.66 | 1 |
Target: 5'- cCGGCCGGcgGcagUGgcAGGUgggcGUCGGg -3' miRNA: 3'- aGUUGGCCuaCa--ACuuUCCAa---UAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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