miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16073 5' -61.2 NC_004065.1 + 59537 0.66 0.784263
Target:  5'- -aCGCgCCAAUUcCACCgaagaCCCCCCGAAg -3'
miRNA:   3'- agGUGgGGUUGA-GUGGg----GGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 110388 0.66 0.775451
Target:  5'- -aCACCCaguucgguauCGGCUCGCUCCCCguCCCGGc -3'
miRNA:   3'- agGUGGG----------GUUGAGUGGGGGG--GGGUUu -5'
16073 5' -61.2 NC_004065.1 + 22554 0.66 0.774563
Target:  5'- cCCACCUCAaccccagcgcacgGCUCACCCCaaCUCGu- -3'
miRNA:   3'- aGGUGGGGU-------------UGAGUGGGGggGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 73744 0.66 0.766523
Target:  5'- gCCGCCgCuACUC-CCgCCUCCCGAGg -3'
miRNA:   3'- aGGUGGgGuUGAGuGGgGGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 15812 0.66 0.766523
Target:  5'- cCCGCCCgucuaCAAaugaUCACCCcgguCCCCCCGc- -3'
miRNA:   3'- aGGUGGG-----GUUg---AGUGGG----GGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 210253 0.66 0.766523
Target:  5'- uUUgACUCCGGCUCcgucGCCCacaCCCCCGc- -3'
miRNA:   3'- -AGgUGGGGUUGAG----UGGGg--GGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 93705 0.66 0.766523
Target:  5'- cCCuCCUCGGCUCACCggaCCUCCAGg -3'
miRNA:   3'- aGGuGGGGUUGAGUGGgg-GGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 205576 0.66 0.757487
Target:  5'- gCUGCCCC-ACUaCGCCagCCUCCCGAGg -3'
miRNA:   3'- aGGUGGGGuUGA-GUGGg-GGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 125203 0.66 0.757487
Target:  5'- -gCACCCgCAGCcgcggUCACCUUaCCCCCGAGg -3'
miRNA:   3'- agGUGGG-GUUG-----AGUGGGG-GGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 128415 0.66 0.754757
Target:  5'- gUCCGCCCCGuuuucauaugcgacGCgcgcCGCCUCUCCCUg-- -3'
miRNA:   3'- -AGGUGGGGU--------------UGa---GUGGGGGGGGGuuu -5'
16073 5' -61.2 NC_004065.1 + 164967 0.66 0.748351
Target:  5'- aUCC-CCCCucGC-CGCCCUCCUCCu-- -3'
miRNA:   3'- -AGGuGGGGu-UGaGUGGGGGGGGGuuu -5'
16073 5' -61.2 NC_004065.1 + 120914 0.66 0.748351
Target:  5'- gCCACCuCCGucccCUCuCCUCCgCCCAGAa -3'
miRNA:   3'- aGGUGG-GGUu---GAGuGGGGGgGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 162356 0.66 0.748351
Target:  5'- cCCGCCgCCGccGC-CGCCgCUCCCCGAc -3'
miRNA:   3'- aGGUGG-GGU--UGaGUGGgGGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 42811 0.66 0.739123
Target:  5'- cUCCuuCUCUucCUCAUCCUCCCCCGu- -3'
miRNA:   3'- -AGGu-GGGGuuGAGUGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 138867 0.66 0.739123
Target:  5'- cUUACCCCGuGCUC-CUgCCCCCCGu- -3'
miRNA:   3'- aGGUGGGGU-UGAGuGGgGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 186753 0.66 0.739123
Target:  5'- gCCACgCCGGa-CAUCCCCCCCUu-- -3'
miRNA:   3'- aGGUGgGGUUgaGUGGGGGGGGGuuu -5'
16073 5' -61.2 NC_004065.1 + 45125 0.66 0.739123
Target:  5'- gCCACCCgGGC--GCCCgCUCCCGAu -3'
miRNA:   3'- aGGUGGGgUUGagUGGGgGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 77267 0.66 0.739123
Target:  5'- aCCGCCaCCGuuAC-CGCUaccaCCCCCCGAAa -3'
miRNA:   3'- aGGUGG-GGU--UGaGUGGg---GGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 25661 0.66 0.739123
Target:  5'- -aCAUCCUcGCUacguGCCUCCCCCCAu- -3'
miRNA:   3'- agGUGGGGuUGAg---UGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 29446 0.66 0.739123
Target:  5'- -aCGCCCgCGAC-CACCCUUCUCCAc- -3'
miRNA:   3'- agGUGGG-GUUGaGUGGGGGGGGGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.