Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16073 | 5' | -61.2 | NC_004065.1 | + | 93185 | 1.06 | 0.002349 |
Target: 5'- uUCCACCCCAACUCACCCCCCCCCAAAc -3' miRNA: 3'- -AGGUGGGGUUGAGUGGGGGGGGGUUU- -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 134987 | 0.83 | 0.091003 |
Target: 5'- cCCACCCCAGCcCACCCCgagUCCCCAGAa -3' miRNA: 3'- aGGUGGGGUUGaGUGGGG---GGGGGUUU- -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 32545 | 0.82 | 0.108473 |
Target: 5'- -aCACCCCcACcaUCACCCCCCCCCAc- -3' miRNA: 3'- agGUGGGGuUG--AGUGGGGGGGGGUuu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 149420 | 0.76 | 0.249852 |
Target: 5'- aCCGCCCCGAuuuuCUCcguaccguccucggACUCCCCCCCGAGg -3' miRNA: 3'- aGGUGGGGUU----GAG--------------UGGGGGGGGGUUU- -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 82223 | 0.75 | 0.287953 |
Target: 5'- gUCCACuCCCAACUCGuacaccuuccucCCCUCCUCCAGc -3' miRNA: 3'- -AGGUG-GGGUUGAGU------------GGGGGGGGGUUu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 18870 | 0.75 | 0.294405 |
Target: 5'- -aCAUCCCGGCacgccCGCUCCCCCCCGAAc -3' miRNA: 3'- agGUGGGGUUGa----GUGGGGGGGGGUUU- -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 188113 | 0.74 | 0.342717 |
Target: 5'- aCCGCCaCCAGCUUGCaCCCCUCCGGGg -3' miRNA: 3'- aGGUGG-GGUUGAGUGgGGGGGGGUUU- -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 152866 | 0.73 | 0.372789 |
Target: 5'- gCCACCgCAGCUUcaACCUCCaCCCCAAc -3' miRNA: 3'- aGGUGGgGUUGAG--UGGGGG-GGGGUUu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 93227 | 0.73 | 0.388483 |
Target: 5'- cCCGCCCUcccagcucgAGCUgGCCCCCCCgCAu- -3' miRNA: 3'- aGGUGGGG---------UUGAgUGGGGGGGgGUuu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 78620 | 0.72 | 0.404604 |
Target: 5'- aCCACCCCGACcgACCCgCCUCCGc- -3' miRNA: 3'- aGGUGGGGUUGagUGGGgGGGGGUuu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 27797 | 0.72 | 0.43808 |
Target: 5'- cUCCuGCCCCAGCagacgUCGCCCagCCCUCCGAu -3' miRNA: 3'- -AGG-UGGGGUUG-----AGUGGG--GGGGGGUUu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 135302 | 0.72 | 0.43808 |
Target: 5'- cUCCGCCgCCGACUUcggcccgcucgaGCCgCCCUCCAAGg -3' miRNA: 3'- -AGGUGG-GGUUGAG------------UGGgGGGGGGUUU- -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 93600 | 0.71 | 0.455402 |
Target: 5'- aCCgACCUCGGCUCACCgggCCCCCAGGa -3' miRNA: 3'- aGG-UGGGGUUGAGUGGgg-GGGGGUUU- -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 53559 | 0.71 | 0.464201 |
Target: 5'- cUCCGCCUCuGCccgaCAUCCCUCCCCGAc -3' miRNA: 3'- -AGGUGGGGuUGa---GUGGGGGGGGGUUu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 83446 | 0.71 | 0.464201 |
Target: 5'- gCCACCCCGAucccCUUACCCgcgaCCCCUAGc -3' miRNA: 3'- aGGUGGGGUU----GAGUGGGg---GGGGGUUu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 154428 | 0.71 | 0.482059 |
Target: 5'- aCCAgaCCCAGCg-GCCUCCCCCCGc- -3' miRNA: 3'- aGGUg-GGGUUGagUGGGGGGGGGUuu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 89552 | 0.71 | 0.482059 |
Target: 5'- aUCCuCCUCGucCUCAUCUCCCCCCGu- -3' miRNA: 3'- -AGGuGGGGUu-GAGUGGGGGGGGGUuu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 149931 | 0.7 | 0.500243 |
Target: 5'- cCCguGCCCgAACUCACCCUCUCCUc-- -3' miRNA: 3'- aGG--UGGGgUUGAGUGGGGGGGGGuuu -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 86768 | 0.7 | 0.509448 |
Target: 5'- gCCGCCCCcGCcgcggguccaUCuCCCaCCCCCCGGAu -3' miRNA: 3'- aGGUGGGGuUG----------AGuGGG-GGGGGGUUU- -5' |
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16073 | 5' | -61.2 | NC_004065.1 | + | 223644 | 0.7 | 0.518724 |
Target: 5'- uUCCACCCCucccacACU-ACCCCCgucaCCCAGAu -3' miRNA: 3'- -AGGUGGGGu-----UGAgUGGGGGg---GGGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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