miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16073 5' -61.2 NC_004065.1 + 29446 0.66 0.739123
Target:  5'- -aCGCCCgCGAC-CACCCUUCUCCAc- -3'
miRNA:   3'- agGUGGG-GUUGaGUGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 28713 0.66 0.72981
Target:  5'- cCCGCCaCCAucauccuCUCcUCCUCCCCCGGc -3'
miRNA:   3'- aGGUGG-GGUu------GAGuGGGGGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 47593 0.67 0.720421
Target:  5'- aCCAggacCCCCGGCUgcccaGCgCCCCCUCGAGg -3'
miRNA:   3'- aGGU----GGGGUUGAg----UGgGGGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 174569 0.67 0.720421
Target:  5'- uUUCuCCCCAAC--ACCUUCCCCCAGc -3'
miRNA:   3'- -AGGuGGGGUUGagUGGGGGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 163895 0.67 0.720421
Target:  5'- gUCCGCggCCCAGCgcgccagCGCCUcggugaugucgCCCCCCAGc -3'
miRNA:   3'- -AGGUG--GGGUUGa------GUGGG-----------GGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 64482 0.67 0.720421
Target:  5'- cUCCGaUCCAGC-CACCCgUCCCCAc- -3'
miRNA:   3'- -AGGUgGGGUUGaGUGGGgGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 93732 0.67 0.719479
Target:  5'- aCCAgcuCCCCGGCUCgauuccucgcACCCCgcuuggcUCCCCAGAc -3'
miRNA:   3'- aGGU---GGGGUUGAG----------UGGGG-------GGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 27426 0.67 0.710964
Target:  5'- aUCGCaCCCAGcCUCugCCCgUCCCAc- -3'
miRNA:   3'- aGGUG-GGGUU-GAGugGGGgGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 93412 0.67 0.710964
Target:  5'- gCCGCCUCGGaccagCGCCCCgCaCCCCAc- -3'
miRNA:   3'- aGGUGGGGUUga---GUGGGG-G-GGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 50470 0.67 0.701446
Target:  5'- aUCCACaagCCCAGCUC-CCCaCCCaucaCCAu- -3'
miRNA:   3'- -AGGUG---GGGUUGAGuGGG-GGGg---GGUuu -5'
16073 5' -61.2 NC_004065.1 + 134715 0.67 0.691876
Target:  5'- gUCACCCCAugaauccuaUUACCCCCaCUCCAc- -3'
miRNA:   3'- aGGUGGGGUug-------AGUGGGGG-GGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 167805 0.67 0.68226
Target:  5'- cCUAUCCCGAUUC-CCgCUCCCCGGu -3'
miRNA:   3'- aGGUGGGGUUGAGuGGgGGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 209895 0.67 0.68226
Target:  5'- cCCAuUCCCAGgUCAaCCCgCCCCAGAu -3'
miRNA:   3'- aGGU-GGGGUUgAGUgGGGgGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 198215 0.67 0.672607
Target:  5'- cUCCGCgUCCGGCagGCCCCCCggccuguagCCCAGc -3'
miRNA:   3'- -AGGUG-GGGUUGagUGGGGGG---------GGGUUu -5'
16073 5' -61.2 NC_004065.1 + 107159 0.67 0.672607
Target:  5'- --aGCUCCAACUCGCUCUgCCgCCAGAg -3'
miRNA:   3'- aggUGGGGUUGAGUGGGGgGG-GGUUU- -5'
16073 5' -61.2 NC_004065.1 + 111308 0.67 0.67164
Target:  5'- aCCugCCgGacacgacGCUC-CCCCUCCCCAu- -3'
miRNA:   3'- aGGugGGgU-------UGAGuGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 167644 0.68 0.662924
Target:  5'- gCCACCCCcGCcgcCACCaCCCCgCCGc- -3'
miRNA:   3'- aGGUGGGGuUGa--GUGG-GGGGgGGUuu -5'
16073 5' -61.2 NC_004065.1 + 80980 0.68 0.653219
Target:  5'- gCCGCCgCCGucgUCGCCCgCUCCCGAGg -3'
miRNA:   3'- aGGUGG-GGUug-AGUGGGgGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 181697 0.68 0.653219
Target:  5'- uUCCgACCCCGGCUCAUCCucaucaucgauCCCUUCGGc -3'
miRNA:   3'- -AGG-UGGGGUUGAGUGGG-----------GGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 102554 0.68 0.653219
Target:  5'- gCCGCgCCCGAC-CACCUCCCCg---- -3'
miRNA:   3'- aGGUG-GGGUUGaGUGGGGGGGgguuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.