miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16073 5' -61.2 NC_004065.1 + 671 0.68 0.643498
Target:  5'- -aUACCCgGggaguauugGCggggCACCCCCCCCCGc- -3'
miRNA:   3'- agGUGGGgU---------UGa---GUGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 15812 0.66 0.766523
Target:  5'- cCCGCCCgucuaCAAaugaUCACCCcgguCCCCCCGc- -3'
miRNA:   3'- aGGUGGG-----GUUg---AGUGGG----GGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 16560 0.7 0.518724
Target:  5'- aCCGCUCCGACUaCACCUCagCCCGAGa -3'
miRNA:   3'- aGGUGGGGUUGA-GUGGGGggGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 18870 0.75 0.294405
Target:  5'- -aCAUCCCGGCacgccCGCUCCCCCCCGAAc -3'
miRNA:   3'- agGUGGGGUUGa----GUGGGGGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 22554 0.66 0.774563
Target:  5'- cCCACCUCAaccccagcgcacgGCUCACCCCaaCUCGu- -3'
miRNA:   3'- aGGUGGGGU-------------UGAGUGGGGggGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 25661 0.66 0.739123
Target:  5'- -aCAUCCUcGCUacguGCCUCCCCCCAu- -3'
miRNA:   3'- agGUGGGGuUGAg---UGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 27039 0.7 0.537469
Target:  5'- cUCCACCCgA--UUAUCCUCCCCCAc- -3'
miRNA:   3'- -AGGUGGGgUugAGUGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 27426 0.67 0.710964
Target:  5'- aUCGCaCCCAGcCUCugCCCgUCCCAc- -3'
miRNA:   3'- aGGUG-GGGUU-GAGugGGGgGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 27797 0.72 0.43808
Target:  5'- cUCCuGCCCCAGCagacgUCGCCCagCCCUCCGAu -3'
miRNA:   3'- -AGG-UGGGGUUG-----AGUGGG--GGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 28713 0.66 0.72981
Target:  5'- cCCGCCaCCAucauccuCUCcUCCUCCCCCGGc -3'
miRNA:   3'- aGGUGG-GGUu------GAGuGGGGGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 29446 0.66 0.739123
Target:  5'- -aCGCCCgCGAC-CACCCUUCUCCAc- -3'
miRNA:   3'- agGUGGG-GUUGaGUGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 32545 0.82 0.108473
Target:  5'- -aCACCCCcACcaUCACCCCCCCCCAc- -3'
miRNA:   3'- agGUGGGGuUG--AGUGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 34356 0.69 0.556442
Target:  5'- gCCuucCCCCGAUcaggUCACCaguuuaCCCCCCAAGa -3'
miRNA:   3'- aGGu--GGGGUUG----AGUGGg-----GGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 42052 0.68 0.614316
Target:  5'- gCgGCCgCAGCUgCACCCUCUCCCGc- -3'
miRNA:   3'- aGgUGGgGUUGA-GUGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 42811 0.66 0.739123
Target:  5'- cUCCuuCUCUucCUCAUCCUCCCCCGu- -3'
miRNA:   3'- -AGGu-GGGGuuGAGUGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 45125 0.66 0.739123
Target:  5'- gCCACCCgGGC--GCCCgCUCCCGAu -3'
miRNA:   3'- aGGUGGGgUUGagUGGGgGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 47593 0.67 0.720421
Target:  5'- aCCAggacCCCCGGCUgcccaGCgCCCCCUCGAGg -3'
miRNA:   3'- aGGU----GGGGUUGAg----UGgGGGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 50470 0.67 0.701446
Target:  5'- aUCCACaagCCCAGCUC-CCCaCCCaucaCCAu- -3'
miRNA:   3'- -AGGUG---GGGUUGAGuGGG-GGGg---GGUuu -5'
16073 5' -61.2 NC_004065.1 + 53559 0.71 0.464201
Target:  5'- cUCCGCCUCuGCccgaCAUCCCUCCCCGAc -3'
miRNA:   3'- -AGGUGGGGuUGa---GUGGGGGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 53703 0.68 0.624041
Target:  5'- gCCG-CCCGAC-CGCCCUccuCCCCCAAu -3'
miRNA:   3'- aGGUgGGGUUGaGUGGGG---GGGGGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.