miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16073 5' -61.2 NC_004065.1 + 199733 0.69 0.594911
Target:  5'- aUCCugCCCGACcCGCaggCCCacgaCCCCGAAg -3'
miRNA:   3'- -AGGugGGGUUGaGUG---GGGg---GGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 223644 0.7 0.518724
Target:  5'- uUCCACCCCucccacACU-ACCCCCgucaCCCAGAu -3'
miRNA:   3'- -AGGUGGGGu-----UGAgUGGGGGg---GGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 90176 0.7 0.528065
Target:  5'- gCCGCCUCcGCcgUCGCCCgCCUCCCGGGa -3'
miRNA:   3'- aGGUGGGGuUG--AGUGGG-GGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 87544 0.7 0.537469
Target:  5'- gCCACCCCcuGGCUCGCguCCaCCgCCCCAu- -3'
miRNA:   3'- aGGUGGGG--UUGAGUG--GG-GG-GGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 27039 0.7 0.537469
Target:  5'- cUCCACCCgA--UUAUCCUCCCCCAc- -3'
miRNA:   3'- -AGGUGGGgUugAGUGGGGGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 86961 0.7 0.537469
Target:  5'- gUCGCCCCcgaagCGCCCCUCgCCCAGAg -3'
miRNA:   3'- aGGUGGGGuuga-GUGGGGGG-GGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 187787 0.7 0.537469
Target:  5'- -aCACCCCcuaUCGCgCCCCCCgCCGAu -3'
miRNA:   3'- agGUGGGGuugAGUG-GGGGGG-GGUUu -5'
16073 5' -61.2 NC_004065.1 + 86711 0.7 0.546929
Target:  5'- cCCGCCCCcuCUUccccuccuGCCCCggCCCCCGAc -3'
miRNA:   3'- aGGUGGGGuuGAG--------UGGGG--GGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 81150 0.69 0.585242
Target:  5'- uUCguCCCC--CUCGCCCCCCgCCGc- -3'
miRNA:   3'- -AGguGGGGuuGAGUGGGGGGgGGUuu -5'
16073 5' -61.2 NC_004065.1 + 86768 0.7 0.509448
Target:  5'- gCCGCCCCcGCcgcggguccaUCuCCCaCCCCCCGGAu -3'
miRNA:   3'- aGGUGGGGuUG----------AGuGGG-GGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 53559 0.71 0.464201
Target:  5'- cUCCGCCUCuGCccgaCAUCCCUCCCCGAc -3'
miRNA:   3'- -AGGUGGGGuUGa---GUGGGGGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 83446 0.71 0.464201
Target:  5'- gCCACCCCGAucccCUUACCCgcgaCCCCUAGc -3'
miRNA:   3'- aGGUGGGGUU----GAGUGGGg---GGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 82223 0.75 0.287953
Target:  5'- gUCCACuCCCAACUCGuacaccuuccucCCCUCCUCCAGc -3'
miRNA:   3'- -AGGUG-GGGUUGAGU------------GGGGGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 18870 0.75 0.294405
Target:  5'- -aCAUCCCGGCacgccCGCUCCCCCCCGAAc -3'
miRNA:   3'- agGUGGGGUUGa----GUGGGGGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 152866 0.73 0.372789
Target:  5'- gCCACCgCAGCUUcaACCUCCaCCCCAAc -3'
miRNA:   3'- aGGUGGgGUUGAG--UGGGGG-GGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 93227 0.73 0.388483
Target:  5'- cCCGCCCUcccagcucgAGCUgGCCCCCCCgCAu- -3'
miRNA:   3'- aGGUGGGG---------UUGAgUGGGGGGGgGUuu -5'
16073 5' -61.2 NC_004065.1 + 78620 0.72 0.404604
Target:  5'- aCCACCCCGACcgACCCgCCUCCGc- -3'
miRNA:   3'- aGGUGGGGUUGagUGGGgGGGGGUuu -5'
16073 5' -61.2 NC_004065.1 + 27797 0.72 0.43808
Target:  5'- cUCCuGCCCCAGCagacgUCGCCCagCCCUCCGAu -3'
miRNA:   3'- -AGG-UGGGGUUG-----AGUGGG--GGGGGGUUu -5'
16073 5' -61.2 NC_004065.1 + 135302 0.72 0.43808
Target:  5'- cUCCGCCgCCGACUUcggcccgcucgaGCCgCCCUCCAAGg -3'
miRNA:   3'- -AGGUGG-GGUUGAG------------UGGgGGGGGGUUU- -5'
16073 5' -61.2 NC_004065.1 + 93600 0.71 0.455402
Target:  5'- aCCgACCUCGGCUCACCgggCCCCCAGGa -3'
miRNA:   3'- aGG-UGGGGUUGAGUGGgg-GGGGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.