miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16074 3' -55.4 NC_004065.1 + 64759 0.66 0.965143
Target:  5'- cUGUCGGCCaAGGaGC-GCUCCg---- -3'
miRNA:   3'- -ACAGCCGGcUCCgUGaCGAGGaaaac -5'
16074 3' -55.4 NC_004065.1 + 119961 0.66 0.9572
Target:  5'- --aCGGCCgugagccccgaccuGAGGUaguGCUGCUCCUg--- -3'
miRNA:   3'- acaGCCGG--------------CUCCG---UGACGAGGAaaac -5'
16074 3' -55.4 NC_004065.1 + 136401 0.66 0.954556
Target:  5'- gGUCGguaGCCGGGGaGCUGgUCCUg--- -3'
miRNA:   3'- aCAGC---CGGCUCCgUGACgAGGAaaac -5'
16074 3' -55.4 NC_004065.1 + 127356 0.66 0.954556
Target:  5'- aG-CGGCCaucugcuGGUGCUGCUgCUUUUGu -3'
miRNA:   3'- aCaGCCGGcu-----CCGUGACGAgGAAAAC- -5'
16074 3' -55.4 NC_004065.1 + 67458 0.66 0.954556
Target:  5'- cUGUCGGCCGAGGCgGCgGUguaCgugUGc -3'
miRNA:   3'- -ACAGCCGGCUCCG-UGaCGag-GaaaAC- -5'
16074 3' -55.4 NC_004065.1 + 120495 0.66 0.95059
Target:  5'- gUGUCGuGcCCGGGGUAgacggugacCUGCUCCa---- -3'
miRNA:   3'- -ACAGC-C-GGCUCCGU---------GACGAGGaaaac -5'
16074 3' -55.4 NC_004065.1 + 120831 0.66 0.9464
Target:  5'- ---aGGCCGAGGCGCcGCcgCCg---- -3'
miRNA:   3'- acagCCGGCUCCGUGaCGa-GGaaaac -5'
16074 3' -55.4 NC_004065.1 + 119633 0.66 0.9464
Target:  5'- cGUCGGCCGuGGCG-UGUUCg----- -3'
miRNA:   3'- aCAGCCGGCuCCGUgACGAGgaaaac -5'
16074 3' -55.4 NC_004065.1 + 122955 0.67 0.941982
Target:  5'- --cCGGUCguGAGGCGCUGCUCg----- -3'
miRNA:   3'- acaGCCGG--CUCCGUGACGAGgaaaac -5'
16074 3' -55.4 NC_004065.1 + 81720 0.67 0.937335
Target:  5'- cUGgCGGCCGAGGUGCUGaacaCCgugUGu -3'
miRNA:   3'- -ACaGCCGGCUCCGUGACga--GGaaaAC- -5'
16074 3' -55.4 NC_004065.1 + 31758 0.67 0.937335
Target:  5'- gUGUCGGaCgCGuuGCACUGCUCgUggucgUUGa -3'
miRNA:   3'- -ACAGCC-G-GCucCGUGACGAGgAa----AAC- -5'
16074 3' -55.4 NC_004065.1 + 46732 0.67 0.932457
Target:  5'- gGUCGcGCaCGAGGCgcacgcGCUGCUCUc---- -3'
miRNA:   3'- aCAGC-CG-GCUCCG------UGACGAGGaaaac -5'
16074 3' -55.4 NC_004065.1 + 168044 0.68 0.916427
Target:  5'- cGggGGCUGcuGGUGCUGCUCCUggUUGc -3'
miRNA:   3'- aCagCCGGCu-CCGUGACGAGGAa-AAC- -5'
16074 3' -55.4 NC_004065.1 + 108326 0.68 0.902728
Target:  5'- aUGUCGgucaacguuuacuuGCCGAgcGGCACgaGCUCCUUg-- -3'
miRNA:   3'- -ACAGC--------------CGGCU--CCGUGa-CGAGGAAaac -5'
16074 3' -55.4 NC_004065.1 + 101017 0.68 0.898319
Target:  5'- aGUCGGCCGccAGGCGCgaUUCCUc--- -3'
miRNA:   3'- aCAGCCGGC--UCCGUGacGAGGAaaac -5'
16074 3' -55.4 NC_004065.1 + 123504 0.69 0.863697
Target:  5'- aUGUCGGaCGAGGCuaACUGCgugCCg---- -3'
miRNA:   3'- -ACAGCCgGCUCCG--UGACGa--GGaaaac -5'
16074 3' -55.4 NC_004065.1 + 35942 0.69 0.859188
Target:  5'- cUGUcgCGGCCGcAGGUcgucggacucgcgccGCUGCUCCUg--- -3'
miRNA:   3'- -ACA--GCCGGC-UCCG---------------UGACGAGGAaaac -5'
16074 3' -55.4 NC_004065.1 + 20574 0.69 0.848392
Target:  5'- uUGUUGGUCcuuGGGCgACUGCUCCUc--- -3'
miRNA:   3'- -ACAGCCGGc--UCCG-UGACGAGGAaaac -5'
16074 3' -55.4 NC_004065.1 + 110326 0.69 0.848392
Target:  5'- --cUGGCCGGGGCucgUGCUCCUc--- -3'
miRNA:   3'- acaGCCGGCUCCGug-ACGAGGAaaac -5'
16074 3' -55.4 NC_004065.1 + 115849 0.7 0.815549
Target:  5'- cG-CGGCCGGcGGCGC-GCUCCUc--- -3'
miRNA:   3'- aCaGCCGGCU-CCGUGaCGAGGAaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.