miRNA: 3'- -ACAGCCGGCUCCG-UGaCGag-GaaaAC- -5'
miRNA: 3'- aCaGCCGGcu-----CCGUGACGAgGAAAAC- -5'
miRNA: 3'- aCAGC---CGGCUCCgUGACgAGGAaaac -5'
miRNA: 3'- acaGCCGG--------------CUCCG---UGACGAGGAaaac -5'
miRNA: 3'- -ACAGCCGGcUCCgUGaCGAGGaaaac -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16074 | 3' | -55.4 | NC_004065.1 | + | 67458 | 0.66 | 0.954556 |
|
Target: 5'- cUGUCGGCCGAGGCgGCgGUguaCgugUGc -3' miRNA: 3'- -ACAGCCGGCUCCG-UGaCGag-GaaaAC- -5' |
|||||||
| 16074 | 3' | -55.4 | NC_004065.1 | + | 127356 | 0.66 | 0.954556 |
|
Target: 5'- aG-CGGCCaucugcuGGUGCUGCUgCUUUUGu -3' miRNA: 3'- aCaGCCGGcu-----CCGUGACGAgGAAAAC- -5' |
|||||||
| 16074 | 3' | -55.4 | NC_004065.1 | + | 136401 | 0.66 | 0.954556 |
|
Target: 5'- gGUCGguaGCCGGGGaGCUGgUCCUg--- -3' miRNA: 3'- aCAGC---CGGCUCCgUGACgAGGAaaac -5' |
|||||||
| 16074 | 3' | -55.4 | NC_004065.1 | + | 119961 | 0.66 | 0.9572 |
|
Target: 5'- --aCGGCCgugagccccgaccuGAGGUaguGCUGCUCCUg--- -3' miRNA: 3'- acaGCCGG--------------CUCCG---UGACGAGGAaaac -5' |
|||||||
| 16074 | 3' | -55.4 | NC_004065.1 | + | 64759 | 0.66 | 0.965143 |
|
Target: 5'- cUGUCGGCCaAGGaGC-GCUCCg---- -3' miRNA: 3'- -ACAGCCGGcUCCgUGaCGAGGaaaac -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home