Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16074 | 5' | -48.2 | NC_004065.1 | + | 54628 | 0.66 | 0.999922 |
Target: 5'- aUGUAAGAUcgacUGGaaAGUGaCCUCGACCu -3' miRNA: 3'- -ACGUUUUAa---AUCg-UCAC-GGAGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 72572 | 0.66 | 0.999922 |
Target: 5'- aGCAAGA---AGCGGUGCUg-GACUa -3' miRNA: 3'- aCGUUUUaaaUCGUCACGGagCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 91243 | 0.66 | 0.999897 |
Target: 5'- cGCAGAAc--AGCAGccagagcacgGCCUCGACa- -3' miRNA: 3'- aCGUUUUaaaUCGUCa---------CGGAGCUGgc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 109202 | 0.66 | 0.999897 |
Target: 5'- ---------cGGCGGcGCCUCGGCCu -3' miRNA: 3'- acguuuuaaaUCGUCaCGGAGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 143900 | 0.66 | 0.999867 |
Target: 5'- cGCGGAcgggacGGUGGUGCCcagCGACUGg -3' miRNA: 3'- aCGUUUuaaa--UCGUCACGGa--GCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 67579 | 0.66 | 0.999867 |
Target: 5'- cGCcGAAgc--GCAGggGCCUCGGCuCGa -3' miRNA: 3'- aCGuUUUaaauCGUCa-CGGAGCUG-GC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 87079 | 0.66 | 0.999828 |
Target: 5'- cGCGAGGUgggcagcUGGCccuGGUGCCggaacucgaCGGCCGg -3' miRNA: 3'- aCGUUUUAa------AUCG---UCACGGa--------GCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 202623 | 0.66 | 0.999828 |
Target: 5'- gGCAuacgccGGaCAG-GCCUCGACCu -3' miRNA: 3'- aCGUuuuaaaUC-GUCaCGGAGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 31075 | 0.66 | 0.99981 |
Target: 5'- cGCcuuccucaUGGCGGcgGCCUUGGCCGc -3' miRNA: 3'- aCGuuuuaa--AUCGUCa-CGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 88378 | 0.67 | 0.99978 |
Target: 5'- aGCAAGGU--GGCGGUGUa--GGCCa -3' miRNA: 3'- aCGUUUUAaaUCGUCACGgagCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 130798 | 0.67 | 0.999721 |
Target: 5'- cUGCGAGAcguccaucuuccUggAGCGc-GCCUCGGCCGu -3' miRNA: 3'- -ACGUUUU------------AaaUCGUcaCGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 115901 | 0.67 | 0.999647 |
Target: 5'- cUGCGGcucggGGCcGUcgucgGCCUCGGCCGg -3' miRNA: 3'- -ACGUUuuaaaUCGuCA-----CGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 3569 | 0.68 | 0.999318 |
Target: 5'- gGCAGAAggcgAGCccgGUCUCGAUCGg -3' miRNA: 3'- aCGUUUUaaa-UCGucaCGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 120569 | 0.68 | 0.999052 |
Target: 5'- cGCGAGcg--GGCGGgaccuccggcgccgGUCUCGGCCGg -3' miRNA: 3'- aCGUUUuaaaUCGUCa-------------CGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 169256 | 0.68 | 0.998973 |
Target: 5'- gGCGGGAggccGCGGcccugugcgGCCUCGACCu -3' miRNA: 3'- aCGUUUUaaauCGUCa--------CGGAGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 53650 | 0.68 | 0.998751 |
Target: 5'- aGCAGA---UGGUGGcGCCUCGuCCGc -3' miRNA: 3'- aCGUUUuaaAUCGUCaCGGAGCuGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 188986 | 0.68 | 0.99849 |
Target: 5'- gGCcgu-UUUGGCGcagGCCUCGAUCGg -3' miRNA: 3'- aCGuuuuAAAUCGUca-CGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 90907 | 0.68 | 0.99849 |
Target: 5'- cGCGAGcucggAGCAGaccGCgUCGACCGu -3' miRNA: 3'- aCGUUUuaaa-UCGUCa--CGgAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 23624 | 0.68 | 0.99849 |
Target: 5'- gGCGGGuggacgGGCGGcugGCCUCgGGCCGa -3' miRNA: 3'- aCGUUUuaaa--UCGUCa--CGGAG-CUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 27603 | 0.68 | 0.99849 |
Target: 5'- aGCAGAGa--GGUGGuUGCCUCGGCUc -3' miRNA: 3'- aCGUUUUaaaUCGUC-ACGGAGCUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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