miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16074 5' -48.2 NC_004065.1 + 188986 0.68 0.99849
Target:  5'- gGCcgu-UUUGGCGcagGCCUCGAUCGg -3'
miRNA:   3'- aCGuuuuAAAUCGUca-CGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 162081 0.69 0.99815
Target:  5'- aGCGAcugcgUGGCGGUGCggaaaugCUCGAUCGu -3'
miRNA:   3'- aCGUUuuaa-AUCGUCACG-------GAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 61104 0.69 0.997826
Target:  5'- gUGCAGGGUgccGUugaucGUGCuCUCGGCCGa -3'
miRNA:   3'- -ACGUUUUAaauCGu----CACG-GAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 131655 0.69 0.997826
Target:  5'- gGCGGAgcugGUcgAGCAGguaCUCGACCGg -3'
miRNA:   3'- aCGUUU----UAaaUCGUCacgGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 200176 0.69 0.996933
Target:  5'- cGCAAGGgaUGGCGGaUGCCgcuGACCu -3'
miRNA:   3'- aCGUUUUaaAUCGUC-ACGGag-CUGGc -5'
16074 5' -48.2 NC_004065.1 + 52738 0.69 0.996933
Target:  5'- uUGCAcgGUgggAGaaAGUGCCUCGuCCGa -3'
miRNA:   3'- -ACGUuuUAaa-UCg-UCACGGAGCuGGC- -5'
16074 5' -48.2 NC_004065.1 + 184404 0.69 0.996384
Target:  5'- cGCGGAc----GCcGUGUCUCGACCGu -3'
miRNA:   3'- aCGUUUuaaauCGuCACGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 41919 0.7 0.995339
Target:  5'- gUGCAAGcuggUGGCGGUGaCCUacuacgcgucgugcaCGGCCGg -3'
miRNA:   3'- -ACGUUUuaa-AUCGUCAC-GGA---------------GCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 99071 0.7 0.994235
Target:  5'- gGCGAAcauGUUgccgaUGGgGGUGCCgUCGACCa -3'
miRNA:   3'- aCGUUU---UAA-----AUCgUCACGG-AGCUGGc -5'
16074 5' -48.2 NC_004065.1 + 109860 0.7 0.993883
Target:  5'- cGCAGGugccgGGCGGUGCCaccggcgucgccgCGGCCGc -3'
miRNA:   3'- aCGUUUuaaa-UCGUCACGGa------------GCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 108096 0.74 0.953412
Target:  5'- --gGAGAUcc-GCGGUGCCUCGGCCc -3'
miRNA:   3'- acgUUUUAaauCGUCACGGAGCUGGc -5'
16074 5' -48.2 NC_004065.1 + 203554 0.75 0.934911
Target:  5'- cGCGu-AUUU-GCGGUGCCgUCGACCa -3'
miRNA:   3'- aCGUuuUAAAuCGUCACGG-AGCUGGc -5'
16074 5' -48.2 NC_004065.1 + 141642 0.76 0.906031
Target:  5'- gGCGAcgGAgggcggUGGCGGUGCCgCGGCCGc -3'
miRNA:   3'- aCGUU--UUaa----AUCGUCACGGaGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 135627 0.87 0.366309
Target:  5'- cGCucAAAAgg-AGCAGUGCCUCGGCCGa -3'
miRNA:   3'- aCG--UUUUaaaUCGUCACGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 94427 1.1 0.019985
Target:  5'- gUGCAAAAUUUAGCAGUGCCUCGACCGu -3'
miRNA:   3'- -ACGUUUUAAAUCGUCACGGAGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.