miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16074 5' -48.2 NC_004065.1 + 115901 0.67 0.999647
Target:  5'- cUGCGGcucggGGCcGUcgucgGCCUCGGCCGg -3'
miRNA:   3'- -ACGUUuuaaaUCGuCA-----CGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 120569 0.68 0.999052
Target:  5'- cGCGAGcg--GGCGGgaccuccggcgccgGUCUCGGCCGg -3'
miRNA:   3'- aCGUUUuaaaUCGUCa-------------CGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 130798 0.67 0.999721
Target:  5'- cUGCGAGAcguccaucuuccUggAGCGc-GCCUCGGCCGu -3'
miRNA:   3'- -ACGUUUU------------AaaUCGUcaCGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 131655 0.69 0.997826
Target:  5'- gGCGGAgcugGUcgAGCAGguaCUCGACCGg -3'
miRNA:   3'- aCGUUU----UAaaUCGUCacgGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 135627 0.87 0.366309
Target:  5'- cGCucAAAAgg-AGCAGUGCCUCGGCCGa -3'
miRNA:   3'- aCG--UUUUaaaUCGUCACGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 141642 0.76 0.906031
Target:  5'- gGCGAcgGAgggcggUGGCGGUGCCgCGGCCGc -3'
miRNA:   3'- aCGUU--UUaa----AUCGUCACGGaGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 143900 0.66 0.999867
Target:  5'- cGCGGAcgggacGGUGGUGCCcagCGACUGg -3'
miRNA:   3'- aCGUUUuaaa--UCGUCACGGa--GCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 162081 0.69 0.99815
Target:  5'- aGCGAcugcgUGGCGGUGCggaaaugCUCGAUCGu -3'
miRNA:   3'- aCGUUuuaa-AUCGUCACG-------GAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 169256 0.68 0.998973
Target:  5'- gGCGGGAggccGCGGcccugugcgGCCUCGACCu -3'
miRNA:   3'- aCGUUUUaaauCGUCa--------CGGAGCUGGc -5'
16074 5' -48.2 NC_004065.1 + 184404 0.69 0.996384
Target:  5'- cGCGGAc----GCcGUGUCUCGACCGu -3'
miRNA:   3'- aCGUUUuaaauCGuCACGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 188986 0.68 0.99849
Target:  5'- gGCcgu-UUUGGCGcagGCCUCGAUCGg -3'
miRNA:   3'- aCGuuuuAAAUCGUca-CGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 200176 0.69 0.996933
Target:  5'- cGCAAGGgaUGGCGGaUGCCgcuGACCu -3'
miRNA:   3'- aCGUUUUaaAUCGUC-ACGGag-CUGGc -5'
16074 5' -48.2 NC_004065.1 + 202623 0.66 0.999828
Target:  5'- gGCAuacgccGGaCAG-GCCUCGACCu -3'
miRNA:   3'- aCGUuuuaaaUC-GUCaCGGAGCUGGc -5'
16074 5' -48.2 NC_004065.1 + 203554 0.75 0.934911
Target:  5'- cGCGu-AUUU-GCGGUGCCgUCGACCa -3'
miRNA:   3'- aCGUuuUAAAuCGUCACGG-AGCUGGc -5'
16074 5' -48.2 NC_004065.1 + 213475 0.68 0.99849
Target:  5'- gUGUAGucgg-AGCGGUcGCCgCGACCGu -3'
miRNA:   3'- -ACGUUuuaaaUCGUCA-CGGaGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.