Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16074 | 5' | -48.2 | NC_004065.1 | + | 94427 | 1.1 | 0.019985 |
Target: 5'- gUGCAAAAUUUAGCAGUGCCUCGACCGu -3' miRNA: 3'- -ACGUUUUAAAUCGUCACGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 72572 | 0.66 | 0.999922 |
Target: 5'- aGCAAGA---AGCGGUGCUg-GACUa -3' miRNA: 3'- aCGUUUUaaaUCGUCACGGagCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 109202 | 0.66 | 0.999897 |
Target: 5'- ---------cGGCGGcGCCUCGGCCu -3' miRNA: 3'- acguuuuaaaUCGUCaCGGAGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 202623 | 0.66 | 0.999828 |
Target: 5'- gGCAuacgccGGaCAG-GCCUCGACCu -3' miRNA: 3'- aCGUuuuaaaUC-GUCaCGGAGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 31075 | 0.66 | 0.99981 |
Target: 5'- cGCcuuccucaUGGCGGcgGCCUUGGCCGc -3' miRNA: 3'- aCGuuuuaa--AUCGUCa-CGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 130798 | 0.67 | 0.999721 |
Target: 5'- cUGCGAGAcguccaucuuccUggAGCGc-GCCUCGGCCGu -3' miRNA: 3'- -ACGUUUU------------AaaUCGUcaCGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 120569 | 0.68 | 0.999052 |
Target: 5'- cGCGAGcg--GGCGGgaccuccggcgccgGUCUCGGCCGg -3' miRNA: 3'- aCGUUUuaaaUCGUCa-------------CGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 188986 | 0.68 | 0.99849 |
Target: 5'- gGCcgu-UUUGGCGcagGCCUCGAUCGg -3' miRNA: 3'- aCGuuuuAAAUCGUca-CGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 213475 | 0.68 | 0.99849 |
Target: 5'- gUGUAGucgg-AGCGGUcGCCgCGACCGu -3' miRNA: 3'- -ACGUUuuaaaUCGUCA-CGGaGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 90907 | 0.68 | 0.99849 |
Target: 5'- cGCGAGcucggAGCAGaccGCgUCGACCGu -3' miRNA: 3'- aCGUUUuaaa-UCGUCa--CGgAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 23624 | 0.68 | 0.99849 |
Target: 5'- gGCGGGuggacgGGCGGcugGCCUCgGGCCGa -3' miRNA: 3'- aCGUUUuaaa--UCGUCa--CGGAG-CUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 203554 | 0.75 | 0.934911 |
Target: 5'- cGCGu-AUUU-GCGGUGCCgUCGACCa -3' miRNA: 3'- aCGUuuUAAAuCGUCACGG-AGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 108096 | 0.74 | 0.953412 |
Target: 5'- --gGAGAUcc-GCGGUGCCUCGGCCc -3' miRNA: 3'- acgUUUUAaauCGUCACGGAGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 109860 | 0.7 | 0.993883 |
Target: 5'- cGCAGGugccgGGCGGUGCCaccggcgucgccgCGGCCGc -3' miRNA: 3'- aCGUUUuaaa-UCGUCACGGa------------GCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 41919 | 0.7 | 0.995339 |
Target: 5'- gUGCAAGcuggUGGCGGUGaCCUacuacgcgucgugcaCGGCCGg -3' miRNA: 3'- -ACGUUUuaa-AUCGUCAC-GGA---------------GCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 52738 | 0.69 | 0.996933 |
Target: 5'- uUGCAcgGUgggAGaaAGUGCCUCGuCCGa -3' miRNA: 3'- -ACGUuuUAaa-UCg-UCACGGAGCuGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 61104 | 0.69 | 0.997826 |
Target: 5'- gUGCAGGGUgccGUugaucGUGCuCUCGGCCGa -3' miRNA: 3'- -ACGUUUUAaauCGu----CACG-GAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 131655 | 0.69 | 0.997826 |
Target: 5'- gGCGGAgcugGUcgAGCAGguaCUCGACCGg -3' miRNA: 3'- aCGUUU----UAaaUCGUCacgGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 54628 | 0.66 | 0.999922 |
Target: 5'- aUGUAAGAUcgacUGGaaAGUGaCCUCGACCu -3' miRNA: 3'- -ACGUUUUAa---AUCg-UCAC-GGAGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 141642 | 0.76 | 0.906031 |
Target: 5'- gGCGAcgGAgggcggUGGCGGUGCCgCGGCCGc -3' miRNA: 3'- aCGUU--UUaa----AUCGUCACGGaGCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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