Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16074 | 5' | -48.2 | NC_004065.1 | + | 88378 | 0.67 | 0.99978 |
Target: 5'- aGCAAGGU--GGCGGUGUa--GGCCa -3' miRNA: 3'- aCGUUUUAaaUCGUCACGgagCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 87079 | 0.66 | 0.999828 |
Target: 5'- cGCGAGGUgggcagcUGGCccuGGUGCCggaacucgaCGGCCGg -3' miRNA: 3'- aCGUUUUAa------AUCG---UCACGGa--------GCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 143900 | 0.66 | 0.999867 |
Target: 5'- cGCGGAcgggacGGUGGUGCCcagCGACUGg -3' miRNA: 3'- aCGUUUuaaa--UCGUCACGGa--GCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 67579 | 0.66 | 0.999867 |
Target: 5'- cGCcGAAgc--GCAGggGCCUCGGCuCGa -3' miRNA: 3'- aCGuUUUaaauCGUCa-CGGAGCUG-GC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 91243 | 0.66 | 0.999897 |
Target: 5'- cGCAGAAc--AGCAGccagagcacgGCCUCGACa- -3' miRNA: 3'- aCGUUUUaaaUCGUCa---------CGGAGCUGgc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 169256 | 0.68 | 0.998973 |
Target: 5'- gGCGGGAggccGCGGcccugugcgGCCUCGACCu -3' miRNA: 3'- aCGUUUUaaauCGUCa--------CGGAGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 53650 | 0.68 | 0.998751 |
Target: 5'- aGCAGA---UGGUGGcGCCUCGuCCGc -3' miRNA: 3'- aCGUUUuaaAUCGUCaCGGAGCuGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 27603 | 0.68 | 0.99849 |
Target: 5'- aGCAGAGa--GGUGGuUGCCUCGGCUc -3' miRNA: 3'- aCGUUUUaaaUCGUC-ACGGAGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 162081 | 0.69 | 0.99815 |
Target: 5'- aGCGAcugcgUGGCGGUGCggaaaugCUCGAUCGu -3' miRNA: 3'- aCGUUuuaa-AUCGUCACG-------GAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 200176 | 0.69 | 0.996933 |
Target: 5'- cGCAAGGgaUGGCGGaUGCCgcuGACCu -3' miRNA: 3'- aCGUUUUaaAUCGUC-ACGGag-CUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 184404 | 0.69 | 0.996384 |
Target: 5'- cGCGGAc----GCcGUGUCUCGACCGu -3' miRNA: 3'- aCGUUUuaaauCGuCACGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 99071 | 0.7 | 0.994235 |
Target: 5'- gGCGAAcauGUUgccgaUGGgGGUGCCgUCGACCa -3' miRNA: 3'- aCGUUU---UAA-----AUCgUCACGG-AGCUGGc -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 141642 | 0.76 | 0.906031 |
Target: 5'- gGCGAcgGAgggcggUGGCGGUGCCgCGGCCGc -3' miRNA: 3'- aCGUU--UUaa----AUCGUCACGGaGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 135627 | 0.87 | 0.366309 |
Target: 5'- cGCucAAAAgg-AGCAGUGCCUCGGCCGa -3' miRNA: 3'- aCG--UUUUaaaUCGUCACGGAGCUGGC- -5' |
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16074 | 5' | -48.2 | NC_004065.1 | + | 54628 | 0.66 | 0.999922 |
Target: 5'- aUGUAAGAUcgacUGGaaAGUGaCCUCGACCu -3' miRNA: 3'- -ACGUUUUAa---AUCg-UCAC-GGAGCUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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