miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16074 5' -48.2 NC_004065.1 + 184404 0.69 0.996384
Target:  5'- cGCGGAc----GCcGUGUCUCGACCGu -3'
miRNA:   3'- aCGUUUuaaauCGuCACGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 141642 0.76 0.906031
Target:  5'- gGCGAcgGAgggcggUGGCGGUGCCgCGGCCGc -3'
miRNA:   3'- aCGUU--UUaa----AUCGUCACGGaGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 135627 0.87 0.366309
Target:  5'- cGCucAAAAgg-AGCAGUGCCUCGGCCGa -3'
miRNA:   3'- aCG--UUUUaaaUCGUCACGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 115901 0.67 0.999647
Target:  5'- cUGCGGcucggGGCcGUcgucgGCCUCGGCCGg -3'
miRNA:   3'- -ACGUUuuaaaUCGuCA-----CGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 169256 0.68 0.998973
Target:  5'- gGCGGGAggccGCGGcccugugcgGCCUCGACCu -3'
miRNA:   3'- aCGUUUUaaauCGUCa--------CGGAGCUGGc -5'
16074 5' -48.2 NC_004065.1 + 53650 0.68 0.998751
Target:  5'- aGCAGA---UGGUGGcGCCUCGuCCGc -3'
miRNA:   3'- aCGUUUuaaAUCGUCaCGGAGCuGGC- -5'
16074 5' -48.2 NC_004065.1 + 54628 0.66 0.999922
Target:  5'- aUGUAAGAUcgacUGGaaAGUGaCCUCGACCu -3'
miRNA:   3'- -ACGUUUUAa---AUCg-UCAC-GGAGCUGGc -5'
16074 5' -48.2 NC_004065.1 + 143900 0.66 0.999867
Target:  5'- cGCGGAcgggacGGUGGUGCCcagCGACUGg -3'
miRNA:   3'- aCGUUUuaaa--UCGUCACGGa--GCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 87079 0.66 0.999828
Target:  5'- cGCGAGGUgggcagcUGGCccuGGUGCCggaacucgaCGGCCGg -3'
miRNA:   3'- aCGUUUUAa------AUCG---UCACGGa--------GCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 3569 0.68 0.999318
Target:  5'- gGCAGAAggcgAGCccgGUCUCGAUCGg -3'
miRNA:   3'- aCGUUUUaaa-UCGucaCGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 200176 0.69 0.996933
Target:  5'- cGCAAGGgaUGGCGGaUGCCgcuGACCu -3'
miRNA:   3'- aCGUUUUaaAUCGUC-ACGGag-CUGGc -5'
16074 5' -48.2 NC_004065.1 + 67579 0.66 0.999867
Target:  5'- cGCcGAAgc--GCAGggGCCUCGGCuCGa -3'
miRNA:   3'- aCGuUUUaaauCGUCa-CGGAGCUG-GC- -5'
16074 5' -48.2 NC_004065.1 + 162081 0.69 0.99815
Target:  5'- aGCGAcugcgUGGCGGUGCggaaaugCUCGAUCGu -3'
miRNA:   3'- aCGUUuuaa-AUCGUCACG-------GAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 88378 0.67 0.99978
Target:  5'- aGCAAGGU--GGCGGUGUa--GGCCa -3'
miRNA:   3'- aCGUUUUAaaUCGUCACGgagCUGGc -5'
16074 5' -48.2 NC_004065.1 + 91243 0.66 0.999897
Target:  5'- cGCAGAAc--AGCAGccagagcacgGCCUCGACa- -3'
miRNA:   3'- aCGUUUUaaaUCGUCa---------CGGAGCUGgc -5'
16074 5' -48.2 NC_004065.1 + 27603 0.68 0.99849
Target:  5'- aGCAGAGa--GGUGGuUGCCUCGGCUc -3'
miRNA:   3'- aCGUUUUaaaUCGUC-ACGGAGCUGGc -5'
16074 5' -48.2 NC_004065.1 + 99071 0.7 0.994235
Target:  5'- gGCGAAcauGUUgccgaUGGgGGUGCCgUCGACCa -3'
miRNA:   3'- aCGUUU---UAA-----AUCgUCACGG-AGCUGGc -5'
16074 5' -48.2 NC_004065.1 + 31075 0.66 0.99981
Target:  5'- cGCcuuccucaUGGCGGcgGCCUUGGCCGc -3'
miRNA:   3'- aCGuuuuaa--AUCGUCa-CGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 130798 0.67 0.999721
Target:  5'- cUGCGAGAcguccaucuuccUggAGCGc-GCCUCGGCCGu -3'
miRNA:   3'- -ACGUUUU------------AaaUCGUcaCGGAGCUGGC- -5'
16074 5' -48.2 NC_004065.1 + 120569 0.68 0.999052
Target:  5'- cGCGAGcg--GGCGGgaccuccggcgccgGUCUCGGCCGg -3'
miRNA:   3'- aCGUUUuaaaUCGUCa-------------CGGAGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.