miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 108188 0.66 0.814178
Target:  5'- -aCCGaaaccccagaCAUCcCCGCCACCucCGUCCGc -3'
miRNA:   3'- caGGCg---------GUAGcGGCGGUGGu-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 29483 0.66 0.814178
Target:  5'- -gCCGcCCGUCGCCcUCGCCAUGgacgCCc -3'
miRNA:   3'- caGGC-GGUAGCGGcGGUGGUGCa---GGu -5'
16077 3' -61 NC_004065.1 + 120793 0.66 0.814178
Target:  5'- -gCCGCUAcCGCCGCCGucuCC-CGUCg- -3'
miRNA:   3'- caGGCGGUaGCGGCGGU---GGuGCAGgu -5'
16077 3' -61 NC_004065.1 + 66544 0.66 0.814178
Target:  5'- -gCCGCCAcCGgCGCCGCCgACGgagCUc -3'
miRNA:   3'- caGGCGGUaGCgGCGGUGG-UGCa--GGu -5'
16077 3' -61 NC_004065.1 + 104421 0.66 0.814178
Target:  5'- --gCGCgCAUCGacCCGCCGCgCACGgCCAa -3'
miRNA:   3'- cagGCG-GUAGC--GGCGGUG-GUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 198631 0.66 0.814178
Target:  5'- cUCCuCCAggUUGCgCGCCACCAggugcagcguguCGUCCGa -3'
miRNA:   3'- cAGGcGGU--AGCG-GCGGUGGU------------GCAGGU- -5'
16077 3' -61 NC_004065.1 + 30584 0.66 0.814178
Target:  5'- uUCCGCCGcggCGagCGCCucguCCGCGuUCCGa -3'
miRNA:   3'- cAGGCGGUa--GCg-GCGGu---GGUGC-AGGU- -5'
16077 3' -61 NC_004065.1 + 111115 0.66 0.814178
Target:  5'- -gUCGCCAgcuUCGUCGCCAUCugGcUCg- -3'
miRNA:   3'- caGGCGGU---AGCGGCGGUGGugC-AGgu -5'
16077 3' -61 NC_004065.1 + 229439 0.66 0.814178
Target:  5'- gGUCUGCCAccacgggguggCGCUGCCGCCAgcccCGUUg- -3'
miRNA:   3'- -CAGGCGGUa----------GCGGCGGUGGU----GCAGgu -5'
16077 3' -61 NC_004065.1 + 16803 0.66 0.814178
Target:  5'- -aCCGaaCCAUCGUCcacgGCCGCCGuCGUUCAu -3'
miRNA:   3'- caGGC--GGUAGCGG----CGGUGGU-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 56985 0.66 0.814178
Target:  5'- aUCCugaugGCCGUgGCCGCCaugagagcACCGCaUCCGa -3'
miRNA:   3'- cAGG-----CGGUAgCGGCGG--------UGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 222652 0.66 0.814178
Target:  5'- ---gGCCcgCGUcagCGCC-CCACGUCCGa -3'
miRNA:   3'- caggCGGuaGCG---GCGGuGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 36525 0.66 0.813358
Target:  5'- cUCCGCCAgguggaacuacUCGaCCGCCgacaucggggucuACUACGUCa- -3'
miRNA:   3'- cAGGCGGU-----------AGC-GGCGG-------------UGGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 128414 0.66 0.809237
Target:  5'- gGUCCGCCccguuuucauaugcgAcgcgCGCCGCCucuCCcUGUCCGa -3'
miRNA:   3'- -CAGGCGG---------------Ua---GCGGCGGu--GGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 63483 0.66 0.805914
Target:  5'- -gCCGCCAggCGCCGUCgcgcaGCCAgGUgCGg -3'
miRNA:   3'- caGGCGGUa-GCGGCGG-----UGGUgCAgGU- -5'
16077 3' -61 NC_004065.1 + 172571 0.66 0.805914
Target:  5'- --gCGCCAUCGCCaCgACgGCGUCgAa -3'
miRNA:   3'- cagGCGGUAGCGGcGgUGgUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 169530 0.66 0.805914
Target:  5'- uUCCGUCGUgcaagaagaCGCCGCCGCC--GUCUc -3'
miRNA:   3'- cAGGCGGUA---------GCGGCGGUGGugCAGGu -5'
16077 3' -61 NC_004065.1 + 156789 0.66 0.805914
Target:  5'- aUUCGUuagaCAggGUCGUCACCGCGUCCu -3'
miRNA:   3'- cAGGCG----GUagCGGCGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 137859 0.66 0.805914
Target:  5'- -aCCGCgucgAUCGCCGCCGacaGCGUCgGg -3'
miRNA:   3'- caGGCGg---UAGCGGCGGUgg-UGCAGgU- -5'
16077 3' -61 NC_004065.1 + 196220 0.66 0.805914
Target:  5'- -cUUGUCcgCGUCGUC-CCACGUCCGc -3'
miRNA:   3'- caGGCGGuaGCGGCGGuGGUGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.