miRNA display CGI


Results 21 - 40 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 198631 0.66 0.814178
Target:  5'- cUCCuCCAggUUGCgCGCCACCAggugcagcguguCGUCCGa -3'
miRNA:   3'- cAGGcGGU--AGCG-GCGGUGGU------------GCAGGU- -5'
16077 3' -61 NC_004065.1 + 226584 0.66 0.805914
Target:  5'- cUCCGUCcgaGUCGaaccuucgauCUGCCACCAgGUCCc -3'
miRNA:   3'- cAGGCGG---UAGC----------GGCGGUGGUgCAGGu -5'
16077 3' -61 NC_004065.1 + 213479 0.66 0.805914
Target:  5'- aGUCggaGCgGUCGCCGCgACCGuCGacgCCAc -3'
miRNA:   3'- -CAGg--CGgUAGCGGCGgUGGU-GCa--GGU- -5'
16077 3' -61 NC_004065.1 + 63977 0.66 0.771532
Target:  5'- aUCCGCCA-CGCaggCGUCACagCugGUCCGc -3'
miRNA:   3'- cAGGCGGUaGCG---GCGGUG--GugCAGGU- -5'
16077 3' -61 NC_004065.1 + 64149 0.66 0.788974
Target:  5'- -cCCGCUg--GCCGCCgACCugGUCUc -3'
miRNA:   3'- caGGCGGuagCGGCGG-UGGugCAGGu -5'
16077 3' -61 NC_004065.1 + 56985 0.66 0.814178
Target:  5'- aUCCugaugGCCGUgGCCGCCaugagagcACCGCaUCCGa -3'
miRNA:   3'- cAGG-----CGGUAgCGGCGG--------UGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 152037 0.66 0.780312
Target:  5'- cUCCGUCccggggcggcUCGCCGCgGCCAgCGUCUc -3'
miRNA:   3'- cAGGCGGu---------AGCGGCGgUGGU-GCAGGu -5'
16077 3' -61 NC_004065.1 + 88618 0.66 0.780312
Target:  5'- cUCgGCgAUgGCCGCCAgcucgggauCCACGUCgAg -3'
miRNA:   3'- cAGgCGgUAgCGGCGGU---------GGUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 78659 0.66 0.79751
Target:  5'- -gCCGCCAgcgcagCgGCCGgCGCCGCGgcgCCc -3'
miRNA:   3'- caGGCGGUa-----G-CGGCgGUGGUGCa--GGu -5'
16077 3' -61 NC_004065.1 + 140858 0.66 0.780312
Target:  5'- -aCgGCCcugAagGCCGCCGCCAgcgaGUCCAu -3'
miRNA:   3'- caGgCGG---UagCGGCGGUGGUg---CAGGU- -5'
16077 3' -61 NC_004065.1 + 114934 0.66 0.794963
Target:  5'- -aCCGCCggugaucaucaucaGUCGgCGCCGCCgGCcUCCAg -3'
miRNA:   3'- caGGCGG--------------UAGCgGCGGUGG-UGcAGGU- -5'
16077 3' -61 NC_004065.1 + 110490 0.66 0.780312
Target:  5'- uGUUCGCCcUgGCCcuCgACCACGUCCc -3'
miRNA:   3'- -CAGGCGGuAgCGGc-GgUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 138854 0.66 0.771532
Target:  5'- uUCCGCgGcCGUCGCCugCgACGaUCCGu -3'
miRNA:   3'- cAGGCGgUaGCGGCGGugG-UGC-AGGU- -5'
16077 3' -61 NC_004065.1 + 111115 0.66 0.814178
Target:  5'- -gUCGCCAgcuUCGUCGCCAUCugGcUCg- -3'
miRNA:   3'- caGGCGGU---AGCGGCGGUGGugC-AGgu -5'
16077 3' -61 NC_004065.1 + 117468 0.66 0.780312
Target:  5'- cUCCGCgGccgcUCGCCGCCACCG-GUg-- -3'
miRNA:   3'- cAGGCGgU----AGCGGCGGUGGUgCAggu -5'
16077 3' -61 NC_004065.1 + 126027 0.66 0.79751
Target:  5'- --gCGCCAcgaGCCGCuCGCCcaccuucagcACGUCCAu -3'
miRNA:   3'- cagGCGGUag-CGGCG-GUGG----------UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 126000 0.66 0.779439
Target:  5'- gGUCCGCCcgaaucucccacuGUCGUCGCCagacucagucuuGCCGCaggCCAu -3'
miRNA:   3'- -CAGGCGG-------------UAGCGGCGG------------UGGUGca-GGU- -5'
16077 3' -61 NC_004065.1 + 63483 0.66 0.805914
Target:  5'- -gCCGCCAggCGCCGUCgcgcaGCCAgGUgCGg -3'
miRNA:   3'- caGGCGGUa-GCGGCGG-----UGGUgCAgGU- -5'
16077 3' -61 NC_004065.1 + 168501 0.66 0.771532
Target:  5'- -aCUGCgAUCGCCugcgggaugcuGUCGCCGCGUUCu -3'
miRNA:   3'- caGGCGgUAGCGG-----------CGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 222652 0.66 0.814178
Target:  5'- ---gGCCcgCGUcagCGCC-CCACGUCCGa -3'
miRNA:   3'- caggCGGuaGCG---GCGGuGGUGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.