Results 41 - 60 of 287 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16077 | 3' | -61 | NC_004065.1 | + | 78659 | 0.66 | 0.79751 |
Target: 5'- -gCCGCCAgcgcagCgGCCGgCGCCGCGgcgCCc -3' miRNA: 3'- caGGCGGUa-----G-CGGCgGUGGUGCa--GGu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 126027 | 0.66 | 0.79751 |
Target: 5'- --gCGCCAcgaGCCGCuCGCCcaccuucagcACGUCCAu -3' miRNA: 3'- cagGCGGUag-CGGCG-GUGG----------UGCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 131996 | 0.66 | 0.788974 |
Target: 5'- aGUCCGCgAUCGaCGUCuCCGagcUGUCCAg -3' miRNA: 3'- -CAGGCGgUAGCgGCGGuGGU---GCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 114934 | 0.66 | 0.794963 |
Target: 5'- -aCCGCCggugaucaucaucaGUCGgCGCCGCCgGCcUCCAg -3' miRNA: 3'- caGGCGG--------------UAGCgGCGGUGG-UGcAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 52182 | 0.66 | 0.79751 |
Target: 5'- uUCUGaCUGUC-CCGCCGCCugGUuaaCCAa -3' miRNA: 3'- cAGGC-GGUAGcGGCGGUGGugCA---GGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 111858 | 0.66 | 0.796662 |
Target: 5'- ---aGCCGUgacgGCCGCCGCCGCGgucucggugacaaUCCAu -3' miRNA: 3'- caggCGGUAg---CGGCGGUGGUGC-------------AGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 30584 | 0.66 | 0.814178 |
Target: 5'- uUCCGCCGcggCGagCGCCucguCCGCGuUCCGa -3' miRNA: 3'- cAGGCGGUa--GCg-GCGGu---GGUGC-AGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 29039 | 0.66 | 0.805914 |
Target: 5'- -aCCGgCGUCGCgaccCGUCACCACGcaCCGa -3' miRNA: 3'- caGGCgGUAGCG----GCGGUGGUGCa-GGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 226584 | 0.66 | 0.805914 |
Target: 5'- cUCCGUCcgaGUCGaaccuucgauCUGCCACCAgGUCCc -3' miRNA: 3'- cAGGCGG---UAGC----------GGCGGUGGUgCAGGu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 168501 | 0.66 | 0.771532 |
Target: 5'- -aCUGCgAUCGCCugcgggaugcuGUCGCCGCGUUCu -3' miRNA: 3'- caGGCGgUAGCGG-----------CGGUGGUGCAGGu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 56985 | 0.66 | 0.814178 |
Target: 5'- aUCCugaugGCCGUgGCCGCCaugagagcACCGCaUCCGa -3' miRNA: 3'- cAGG-----CGGUAgCGGCGG--------UGGUGcAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 205965 | 0.66 | 0.79751 |
Target: 5'- -gCCGCUcaUGCUGCCGCCGCucaCCAu -3' miRNA: 3'- caGGCGGuaGCGGCGGUGGUGca-GGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 172571 | 0.66 | 0.805914 |
Target: 5'- --gCGCCAUCGCCaCgACgGCGUCgAa -3' miRNA: 3'- cagGCGGUAGCGGcGgUGgUGCAGgU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 128414 | 0.66 | 0.809237 |
Target: 5'- gGUCCGCCccguuuucauaugcgAcgcgCGCCGCCucuCCcUGUCCGa -3' miRNA: 3'- -CAGGCGG---------------Ua---GCGGCGGu--GGuGCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 222652 | 0.66 | 0.814178 |
Target: 5'- ---gGCCcgCGUcagCGCC-CCACGUCCGa -3' miRNA: 3'- caggCGGuaGCG---GCGGuGGUGCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 198631 | 0.66 | 0.814178 |
Target: 5'- cUCCuCCAggUUGCgCGCCACCAggugcagcguguCGUCCGa -3' miRNA: 3'- cAGGcGGU--AGCG-GCGGUGGU------------GCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 138854 | 0.66 | 0.771532 |
Target: 5'- uUCCGCgGcCGUCGCCugCgACGaUCCGu -3' miRNA: 3'- cAGGCGgUaGCGGCGGugG-UGC-AGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 156789 | 0.66 | 0.805914 |
Target: 5'- aUUCGUuagaCAggGUCGUCACCGCGUCCu -3' miRNA: 3'- cAGGCG----GUagCGGCGGUGGUGCAGGu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 229439 | 0.66 | 0.814178 |
Target: 5'- gGUCUGCCAccacgggguggCGCUGCCGCCAgcccCGUUg- -3' miRNA: 3'- -CAGGCGGUa----------GCGGCGGUGGU----GCAGgu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 169530 | 0.66 | 0.805914 |
Target: 5'- uUCCGUCGUgcaagaagaCGCCGCCGCC--GUCUc -3' miRNA: 3'- cAGGCGGUA---------GCGGCGGUGGugCAGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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