miRNA display CGI


Results 61 - 80 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 140858 0.66 0.780312
Target:  5'- -aCgGCCcugAagGCCGCCGCCAgcgaGUCCAu -3'
miRNA:   3'- caGgCGG---UagCGGCGGUGGUg---CAGGU- -5'
16077 3' -61 NC_004065.1 + 143227 0.66 0.780312
Target:  5'- -gCCGCguUCGCCGC-GCC-CGUCUu -3'
miRNA:   3'- caGGCGguAGCGGCGgUGGuGCAGGu -5'
16077 3' -61 NC_004065.1 + 117468 0.66 0.780312
Target:  5'- cUCCGCgGccgcUCGCCGCCACCG-GUg-- -3'
miRNA:   3'- cAGGCGgU----AGCGGCGGUGGUgCAggu -5'
16077 3' -61 NC_004065.1 + 133131 0.66 0.788974
Target:  5'- -aUCGCCuUCGaCCGugagcuCCACCACgGUCCAc -3'
miRNA:   3'- caGGCGGuAGC-GGC------GGUGGUG-CAGGU- -5'
16077 3' -61 NC_004065.1 + 64149 0.66 0.788974
Target:  5'- -cCCGCUg--GCCGCCgACCugGUCUc -3'
miRNA:   3'- caGGCGGuagCGGCGG-UGGugCAGGu -5'
16077 3' -61 NC_004065.1 + 73716 0.66 0.788974
Target:  5'- cUCCGCCGcCGCUGCUggcGCCACugcugCCGc -3'
miRNA:   3'- cAGGCGGUaGCGGCGG---UGGUGca---GGU- -5'
16077 3' -61 NC_004065.1 + 110855 0.66 0.771532
Target:  5'- -gCCGCCcgcGUCGaaCCGUCGCCAUG-CCGa -3'
miRNA:   3'- caGGCGG---UAGC--GGCGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 186157 0.67 0.744563
Target:  5'- -gCCGUgGagGCCGCCACCGaacUCCAc -3'
miRNA:   3'- caGGCGgUagCGGCGGUGGUgc-AGGU- -5'
16077 3' -61 NC_004065.1 + 170883 0.67 0.762643
Target:  5'- cUCuCGCCGUCGUCGCC-UCGCGcUCg- -3'
miRNA:   3'- cAG-GCGGUAGCGGCGGuGGUGC-AGgu -5'
16077 3' -61 NC_004065.1 + 210972 0.67 0.757259
Target:  5'- -cUCGUCGUCacagaugugggccaCCGCCGCCGuCGUCCAa -3'
miRNA:   3'- caGGCGGUAGc-------------GGCGGUGGU-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 65651 0.67 0.716809
Target:  5'- -cCCGCUGcCGCUGCCGCCGCaggaagaUCCGa -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGc------AGGU- -5'
16077 3' -61 NC_004065.1 + 65269 0.67 0.75365
Target:  5'- --aCGCCAcguacCGCacgGCCGCgGCGUCCAg -3'
miRNA:   3'- cagGCGGUa----GCGg--CGGUGgUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 152919 0.67 0.75365
Target:  5'- uGUCgGCgG-CGCUGCCGCCGCGg-CAa -3'
miRNA:   3'- -CAGgCGgUaGCGGCGGUGGUGCagGU- -5'
16077 3' -61 NC_004065.1 + 63852 0.67 0.748209
Target:  5'- cGUUCGCCAUgGCCGCguucggaaggaccacCACCcgcACGUCa- -3'
miRNA:   3'- -CAGGCGGUAgCGGCG---------------GUGG---UGCAGgu -5'
16077 3' -61 NC_004065.1 + 76811 0.67 0.762643
Target:  5'- -aCCGuUCAUCGCCGUCGCgGCGcUCgCGa -3'
miRNA:   3'- caGGC-GGUAGCGGCGGUGgUGC-AG-GU- -5'
16077 3' -61 NC_004065.1 + 34132 0.67 0.716809
Target:  5'- aGUCCGCCGucUCGUCGaCgACCA-GUUCAa -3'
miRNA:   3'- -CAGGCGGU--AGCGGC-GgUGGUgCAGGU- -5'
16077 3' -61 NC_004065.1 + 197713 0.67 0.735388
Target:  5'- --aCGCCGUCGCgGCCGCCGUGagcUUCAc -3'
miRNA:   3'- cagGCGGUAGCGgCGGUGGUGC---AGGU- -5'
16077 3' -61 NC_004065.1 + 225918 0.67 0.735388
Target:  5'- uUCUGCUGUUGCCGCUucCCGuCGUCUc -3'
miRNA:   3'- cAGGCGGUAGCGGCGGu-GGU-GCAGGu -5'
16077 3' -61 NC_004065.1 + 62030 0.67 0.744563
Target:  5'- -gUCGCCAUCGCUGCUGCUGCuGguggugCCGa -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUG-Ca-----GGU- -5'
16077 3' -61 NC_004065.1 + 128782 0.67 0.716809
Target:  5'- --gCGCCGUCGCCGgcggCACCucugGCGUUCAg -3'
miRNA:   3'- cagGCGGUAGCGGCg---GUGG----UGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.