miRNA display CGI


Results 81 - 100 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 152919 0.67 0.75365
Target:  5'- uGUCgGCgG-CGCUGCCGCCGCGg-CAa -3'
miRNA:   3'- -CAGgCGgUaGCGGCGGUGGUGCagGU- -5'
16077 3' -61 NC_004065.1 + 65269 0.67 0.75365
Target:  5'- --aCGCCAcguacCGCacgGCCGCgGCGUCCAg -3'
miRNA:   3'- cagGCGGUa----GCGg--CGGUGgUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 121045 0.67 0.762643
Target:  5'- -gCCGCgAUCGUCGCgUACUugGUCgCGa -3'
miRNA:   3'- caGGCGgUAGCGGCG-GUGGugCAG-GU- -5'
16077 3' -61 NC_004065.1 + 199965 0.67 0.744563
Target:  5'- -gCCGCCAUCaacgauaaCGCUGCCGCuGUCCu -3'
miRNA:   3'- caGGCGGUAGcg------GCGGUGGUG-CAGGu -5'
16077 3' -61 NC_004065.1 + 130893 0.67 0.726134
Target:  5'- -aCCGCCGUCgGCCGC-ACCuGCGUugCCGu -3'
miRNA:   3'- caGGCGGUAG-CGGCGgUGG-UGCA--GGU- -5'
16077 3' -61 NC_004065.1 + 130661 0.67 0.716809
Target:  5'- aGUCggCGCCGUCGCUGCCAacgcuCGUCgGg -3'
miRNA:   3'- -CAG--GCGGUAGCGGCGGUggu--GCAGgU- -5'
16077 3' -61 NC_004065.1 + 168299 0.67 0.734466
Target:  5'- -cCCGCCAaggagcgcauggcUCGCaucCGCCGCUACG-CCGc -3'
miRNA:   3'- caGGCGGU-------------AGCG---GCGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 17072 0.67 0.735388
Target:  5'- -aCCGCC-UCuCCGaCCGCCACcUCCGa -3'
miRNA:   3'- caGGCGGuAGcGGC-GGUGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 152154 0.67 0.75365
Target:  5'- cUCCGCCAUgGUCa--GCUGCGUCCGg -3'
miRNA:   3'- cAGGCGGUAgCGGcggUGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 131627 0.67 0.744563
Target:  5'- -gCCGCCAcucucaUCGCCcuccucGCCACCACc-CCAg -3'
miRNA:   3'- caGGCGGU------AGCGG------CGGUGGUGcaGGU- -5'
16077 3' -61 NC_004065.1 + 157893 0.67 0.735388
Target:  5'- cUCCuGCguguuCAUCGCCGCguCCAcCGUCCu -3'
miRNA:   3'- cAGG-CG-----GUAGCGGCGguGGU-GCAGGu -5'
16077 3' -61 NC_004065.1 + 6806 0.67 0.735388
Target:  5'- -aCCG-CGUCGCCGCUACCGCcgacgacUCCc -3'
miRNA:   3'- caGGCgGUAGCGGCGGUGGUGc------AGGu -5'
16077 3' -61 NC_004065.1 + 109472 0.67 0.735388
Target:  5'- -cCCGCUcgCGCCGaCCGCCGcCGgcacaCCGg -3'
miRNA:   3'- caGGCGGuaGCGGC-GGUGGU-GCa----GGU- -5'
16077 3' -61 NC_004065.1 + 167374 0.67 0.743649
Target:  5'- -gCUGCCGUCuCCGCCGCCAaugcugcUGUCa- -3'
miRNA:   3'- caGGCGGUAGcGGCGGUGGU-------GCAGgu -5'
16077 3' -61 NC_004065.1 + 152603 0.67 0.744563
Target:  5'- cGUCCGUCAgcagCGCCcgggucaCCGCCAUGUgcgCCAg -3'
miRNA:   3'- -CAGGCGGUa---GCGGc------GGUGGUGCA---GGU- -5'
16077 3' -61 NC_004065.1 + 131783 0.67 0.75365
Target:  5'- cGUCCcgaGCCGUCGUCGgCACCcuCGaUCCu -3'
miRNA:   3'- -CAGG---CGGUAGCGGCgGUGGu-GC-AGGu -5'
16077 3' -61 NC_004065.1 + 193839 0.67 0.744563
Target:  5'- -aCCGCCAccauUCcugcuGCCGUCGCUuCGUCCGc -3'
miRNA:   3'- caGGCGGU----AG-----CGGCGGUGGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 210972 0.67 0.757259
Target:  5'- -cUCGUCGUCacagaugugggccaCCGCCGCCGuCGUCCAa -3'
miRNA:   3'- caGGCGGUAGc-------------GGCGGUGGU-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 152414 0.67 0.762643
Target:  5'- gGUCCGUCAgCGUCGUguugaaCAUCACGUUCGu -3'
miRNA:   3'- -CAGGCGGUaGCGGCG------GUGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 170883 0.67 0.762643
Target:  5'- cUCuCGCCGUCGUCGCC-UCGCGcUCg- -3'
miRNA:   3'- cAG-GCGGUAGCGGCGGuGGUGC-AGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.