miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 97861 1.08 0.001902
Target:  5'- cGUCCGCCAUCGCCGCCACCACGUCCAg -3'
miRNA:   3'- -CAGGCGGUAGCGGCGGUGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 124325 0.85 0.071808
Target:  5'- gGUUCGCCGUCGCCGCCAgucCCGgGUCCGa -3'
miRNA:   3'- -CAGGCGGUAGCGGCGGU---GGUgCAGGU- -5'
16077 3' -61 NC_004065.1 + 181927 0.84 0.087794
Target:  5'- -gCCGCCAcCGCCGCCGCCACagGUCCGc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUG--CAGGU- -5'
16077 3' -61 NC_004065.1 + 58063 0.81 0.136919
Target:  5'- cUCCGCCGcCGCCGCCGCCACcGcCCGc -3'
miRNA:   3'- cAGGCGGUaGCGGCGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 205175 0.81 0.140286
Target:  5'- -gCCGCCGUCGCCGCCaacaucgggcGCCGCGUgCGu -3'
miRNA:   3'- caGGCGGUAGCGGCGG----------UGGUGCAgGU- -5'
16077 3' -61 NC_004065.1 + 61466 0.8 0.147247
Target:  5'- -cCCGCUGUCGCCGCCGCCGCcgcugCCAc -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUGca---GGU- -5'
16077 3' -61 NC_004065.1 + 133274 0.8 0.150845
Target:  5'- cUCCGCCGUCGCCcugcucGCCcucgcCCGCGUCCAg -3'
miRNA:   3'- cAGGCGGUAGCGG------CGGu----GGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 109917 0.8 0.154522
Target:  5'- cGUCCGCCGcgGCCGCCGUCGCGUCCc -3'
miRNA:   3'- -CAGGCGGUagCGGCGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 109880 0.79 0.174151
Target:  5'- -aCCGgCGUCGCCGCgGCCGCGUCgGg -3'
miRNA:   3'- caGGCgGUAGCGGCGgUGGUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 120902 0.79 0.182607
Target:  5'- -cCCGCCGUCcCCGCCACCucCGUCCc -3'
miRNA:   3'- caGGCGGUAGcGGCGGUGGu-GCAGGu -5'
16077 3' -61 NC_004065.1 + 162356 0.79 0.191424
Target:  5'- -cCCGCCGcCGCCGCCGCCGC-UCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGcAGGu -5'
16077 3' -61 NC_004065.1 + 75873 0.79 0.191424
Target:  5'- -gCCGCCGcCGCCGCCGCCACcGcCCGg -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 161861 0.79 0.191424
Target:  5'- cUCCGUCGcgcgCGCCGCCgcgaucACCGCGUCCAg -3'
miRNA:   3'- cAGGCGGUa---GCGGCGG------UGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 17687 0.78 0.195971
Target:  5'- cGUCgCGCCAUCGCCGUgGCCGuCGUCg- -3'
miRNA:   3'- -CAG-GCGGUAGCGGCGgUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 24583 0.78 0.215113
Target:  5'- gGUCCGCgcguguCGUCGCCGCCACCGCcgccgCCGg -3'
miRNA:   3'- -CAGGCG------GUAGCGGCGGUGGUGca---GGU- -5'
16077 3' -61 NC_004065.1 + 81385 0.78 0.220143
Target:  5'- uGUUCGCCAUCgaGUCGCUGCCGCuGUCCAg -3'
miRNA:   3'- -CAGGCGGUAG--CGGCGGUGGUG-CAGGU- -5'
16077 3' -61 NC_004065.1 + 124571 0.77 0.225273
Target:  5'- gGUUCGCCGucacguucUCGuCCGUCGCCACGUCCc -3'
miRNA:   3'- -CAGGCGGU--------AGC-GGCGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 102892 0.77 0.241273
Target:  5'- -gCCGCCGguagCGCCGCCGCCGCGa--- -3'
miRNA:   3'- caGGCGGUa---GCGGCGGUGGUGCaggu -5'
16077 3' -61 NC_004065.1 + 93370 0.77 0.252457
Target:  5'- -cCCGcCCGUCGCuCGCCACCAgGaUCCAc -3'
miRNA:   3'- caGGC-GGUAGCG-GCGGUGGUgC-AGGU- -5'
16077 3' -61 NC_004065.1 + 195920 0.76 0.258208
Target:  5'- uUCUGCCGgcgcuuuaUCGCCGaUCACCugGUCCAg -3'
miRNA:   3'- cAGGCGGU--------AGCGGC-GGUGGugCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.