miRNA display CGI


Results 21 - 40 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 110425 0.76 0.264066
Target:  5'- cUCCGCCGcCGgCGuCCugCACGUCCAg -3'
miRNA:   3'- cAGGCGGUaGCgGC-GGugGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 127930 0.76 0.264066
Target:  5'- gGUCCgGCCAUCGCCGCC--CGCGUCg- -3'
miRNA:   3'- -CAGG-CGGUAGCGGCGGugGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 195564 0.76 0.276103
Target:  5'- cUCCGCCAUCG-CGCCGCaggauuCGCGUCCc -3'
miRNA:   3'- cAGGCGGUAGCgGCGGUG------GUGCAGGu -5'
16077 3' -61 NC_004065.1 + 159698 0.76 0.276103
Target:  5'- -gCCGCCGUCGCCGCCgauagaacgacgACCACGgagaugauaCCAg -3'
miRNA:   3'- caGGCGGUAGCGGCGG------------UGGUGCa--------GGU- -5'
16077 3' -61 NC_004065.1 + 133608 0.76 0.288576
Target:  5'- aGUCCGCCGU-GCCGCCGCuCGCGagCGc -3'
miRNA:   3'- -CAGGCGGUAgCGGCGGUG-GUGCagGU- -5'
16077 3' -61 NC_004065.1 + 95144 0.75 0.294976
Target:  5'- aGUCCGUagcgacaguucuCGUCGCCGCCGCCgugcaGgGUCCAg -3'
miRNA:   3'- -CAGGCG------------GUAGCGGCGGUGG-----UgCAGGU- -5'
16077 3' -61 NC_004065.1 + 45206 0.75 0.294976
Target:  5'- -gCCGCCGcUGCCGCCACCGCcaCCGu -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGcaGGU- -5'
16077 3' -61 NC_004065.1 + 167641 0.75 0.301486
Target:  5'- -gCCGCCAccccCGCCGCCACCACcccgCCGc -3'
miRNA:   3'- caGGCGGUa---GCGGCGGUGGUGca--GGU- -5'
16077 3' -61 NC_004065.1 + 113704 0.75 0.301486
Target:  5'- --aCGCCGUCGCCGCUGCCGcCG-CCGa -3'
miRNA:   3'- cagGCGGUAGCGGCGGUGGU-GCaGGU- -5'
16077 3' -61 NC_004065.1 + 151445 0.75 0.314838
Target:  5'- -cCCGCCGUCGCUGUUGCCACuGUCg- -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUG-CAGgu -5'
16077 3' -61 NC_004065.1 + 97692 0.75 0.314838
Target:  5'- -cUCGCgGUCGCUGCCGCCGCcgcccgggcuGUCCAg -3'
miRNA:   3'- caGGCGgUAGCGGCGGUGGUG----------CAGGU- -5'
16077 3' -61 NC_004065.1 + 149232 0.75 0.314838
Target:  5'- -gCUGCCGcCGCCGCCGCCGcCGUCg- -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 127635 0.75 0.321679
Target:  5'- -aCCGCUcgCGCUGCCGCUGCGgcgCCGa -3'
miRNA:   3'- caGGCGGuaGCGGCGGUGGUGCa--GGU- -5'
16077 3' -61 NC_004065.1 + 161438 0.75 0.321679
Target:  5'- uGUCggCGCUcuggAUCGCCGCCGCCGCGUUg- -3'
miRNA:   3'- -CAG--GCGG----UAGCGGCGGUGGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 200055 0.75 0.328631
Target:  5'- -gCCGCCGcCGCCGCCGCCAgcaccgGUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUg-----CAGGu -5'
16077 3' -61 NC_004065.1 + 66391 0.74 0.342866
Target:  5'- -gCUGCCGcCGCCGCCGCCGCucgaUCCGg -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGc---AGGU- -5'
16077 3' -61 NC_004065.1 + 164702 0.74 0.342866
Target:  5'- -gCUGCCGcCGCCGCCGCCG-GUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUgCAGGu -5'
16077 3' -61 NC_004065.1 + 162885 0.74 0.349416
Target:  5'- cGUCCGCgAUCGCguccaggCGCgCGCCGCuGUCCAg -3'
miRNA:   3'- -CAGGCGgUAGCG-------GCG-GUGGUG-CAGGU- -5'
16077 3' -61 NC_004065.1 + 198450 0.74 0.357541
Target:  5'- -aCCGaCGUCGCCGCguCCGCGUUCGg -3'
miRNA:   3'- caGGCgGUAGCGGCGguGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 126177 0.74 0.357541
Target:  5'- gGUgCGCgAUCGCCGUCACgGCGUUCu -3'
miRNA:   3'- -CAgGCGgUAGCGGCGGUGgUGCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.