miRNA display CGI


Results 41 - 60 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 115155 0.74 0.357541
Target:  5'- -aCCGCCAUCGUCGUCgggcGCCGCGcCCc -3'
miRNA:   3'- caGGCGGUAGCGGCGG----UGGUGCaGGu -5'
16077 3' -61 NC_004065.1 + 149877 0.74 0.357541
Target:  5'- -cCCGUCGUCaGCCGCCucuGCCGCG-CCAg -3'
miRNA:   3'- caGGCGGUAG-CGGCGG---UGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 160854 0.74 0.365041
Target:  5'- cUCCGUCGccuUCGCCuCCGCCuCGUCCAg -3'
miRNA:   3'- cAGGCGGU---AGCGGcGGUGGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 57762 0.74 0.365041
Target:  5'- -aUCGUCGUCGCCGCCGCCGuCGcUCUc -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGU-GC-AGGu -5'
16077 3' -61 NC_004065.1 + 163397 0.74 0.37265
Target:  5'- cGUCCGCCAcgcagCGCCGCagcCCGCGgcUCCGg -3'
miRNA:   3'- -CAGGCGGUa----GCGGCGgu-GGUGC--AGGU- -5'
16077 3' -61 NC_004065.1 + 90181 0.74 0.37265
Target:  5'- cUCCGCCGUCGcCCGCCucCCGgGacUCCAg -3'
miRNA:   3'- cAGGCGGUAGC-GGCGGu-GGUgC--AGGU- -5'
16077 3' -61 NC_004065.1 + 205499 0.73 0.380366
Target:  5'- -gCCGUCGUCGCUGCCGCCGCcaUCUu -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUGc-AGGu -5'
16077 3' -61 NC_004065.1 + 90395 0.73 0.380366
Target:  5'- -cCCGUCGUCGacaCGCCACCGC-UCCGc -3'
miRNA:   3'- caGGCGGUAGCg--GCGGUGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 66773 0.73 0.380366
Target:  5'- --gCGCCggCGCCGCCGCUGCG-CCGa -3'
miRNA:   3'- cagGCGGuaGCGGCGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 173394 0.73 0.388187
Target:  5'- -gCCGCgGcCGCUGCCACCGCaUCCAc -3'
miRNA:   3'- caGGCGgUaGCGGCGGUGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 154238 0.73 0.395317
Target:  5'- -gCCGCCGcucccccUCGCCGaCCGCCGCcUCCGc -3'
miRNA:   3'- caGGCGGU-------AGCGGC-GGUGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 151387 0.73 0.396114
Target:  5'- aGUCgGCaCGUCGCCcucGCCgACCGCGUUCAc -3'
miRNA:   3'- -CAGgCG-GUAGCGG---CGG-UGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 96989 0.73 0.396114
Target:  5'- cGUCCGUCG-CGCUGCUGCgACGUCUg -3'
miRNA:   3'- -CAGGCGGUaGCGGCGGUGgUGCAGGu -5'
16077 3' -61 NC_004065.1 + 184488 0.73 0.396114
Target:  5'- -gCUGCCGcCGCCGCCGCgGCG-CCGg -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGgUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 116257 0.73 0.404145
Target:  5'- aGUCgGUCGUCuGCCGCCGCgGCuGUCCc -3'
miRNA:   3'- -CAGgCGGUAG-CGGCGGUGgUG-CAGGu -5'
16077 3' -61 NC_004065.1 + 76774 0.73 0.404145
Target:  5'- cGUCCgGCgCAUCGCCGCCGCgACGgcgaacgCUAu -3'
miRNA:   3'- -CAGG-CG-GUAGCGGCGGUGgUGCa------GGU- -5'
16077 3' -61 NC_004065.1 + 27412 0.73 0.412277
Target:  5'- uGUCCGgCGUaUGCCGUCACgAUGUCCGc -3'
miRNA:   3'- -CAGGCgGUA-GCGGCGGUGgUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 194409 0.73 0.412277
Target:  5'- -cCCGCCGcCGCCGCCGCCGUGgaUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGC--AGGu -5'
16077 3' -61 NC_004065.1 + 89253 0.73 0.412277
Target:  5'- cUCuCGUCAUCGUCGuccCCACCACGuUCCAg -3'
miRNA:   3'- cAG-GCGGUAGCGGC---GGUGGUGC-AGGU- -5'
16077 3' -61 NC_004065.1 + 91482 0.73 0.412277
Target:  5'- aGUCCGCC---GCCGCUcguGCCGCGUUCGa -3'
miRNA:   3'- -CAGGCGGuagCGGCGG---UGGUGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.