Results 61 - 80 of 287 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16077 | 3' | -61 | NC_004065.1 | + | 173313 | 0.73 | 0.42051 |
Target: 5'- -gCCGCCGcCGCCGCCGCUGCGg--- -3' miRNA: 3'- caGGCGGUaGCGGCGGUGGUGCaggu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 199236 | 0.72 | 0.428003 |
Target: 5'- cGUCCGUCAgucgucaUCGUCGgCGuCCGCGUCCGc -3' miRNA: 3'- -CAGGCGGU-------AGCGGCgGU-GGUGCAGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 198128 | 0.72 | 0.428841 |
Target: 5'- gGUCUGCgagcugguCAUCGCCGCCGCCAUGg--- -3' miRNA: 3'- -CAGGCG--------GUAGCGGCGGUGGUGCaggu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 161266 | 0.72 | 0.428841 |
Target: 5'- -gCCGCCAgCaCCGCCGCgAUGUCCGa -3' miRNA: 3'- caGGCGGUaGcGGCGGUGgUGCAGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 184169 | 0.72 | 0.428841 |
Target: 5'- cUCCGUCGgaGCgGCCAUCGCGUCCc -3' miRNA: 3'- cAGGCGGUagCGgCGGUGGUGCAGGu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 177362 | 0.72 | 0.437269 |
Target: 5'- aUCCGCCAcCGCCaCCGCCAgCGgcggCCAa -3' miRNA: 3'- cAGGCGGUaGCGGcGGUGGU-GCa---GGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 170256 | 0.72 | 0.445791 |
Target: 5'- -gUgGCCGUgGCCGCCGCCGCcaCCAu -3' miRNA: 3'- caGgCGGUAgCGGCGGUGGUGcaGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 170302 | 0.72 | 0.445791 |
Target: 5'- aGUCCGCgacgGUCGCCGUgCGCCGCGgCCGc -3' miRNA: 3'- -CAGGCGg---UAGCGGCG-GUGGUGCaGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 173488 | 0.72 | 0.45354 |
Target: 5'- --gCGCCugcgguGUCGCCGCCACUcugaagaaaucucGCGUCCGu -3' miRNA: 3'- cagGCGG------UAGCGGCGGUGG-------------UGCAGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 77723 | 0.72 | 0.454405 |
Target: 5'- -cCCGCCGgcacCGCCGCCGCCGCa---- -3' miRNA: 3'- caGGCGGUa---GCGGCGGUGGUGcaggu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 478 | 0.72 | 0.454405 |
Target: 5'- aGUCaGCCuccggGCCGCgCGCCGCGUCCGc -3' miRNA: 3'- -CAGgCGGuag--CGGCG-GUGGUGCAGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 78909 | 0.72 | 0.463109 |
Target: 5'- -gCCGCCuUCGCUGCUGCCGuCGUCg- -3' miRNA: 3'- caGGCGGuAGCGGCGGUGGU-GCAGgu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 85664 | 0.72 | 0.463109 |
Target: 5'- -aCCGCCAgCGCCGUcgaCAUCGCGUaCCAg -3' miRNA: 3'- caGGCGGUaGCGGCG---GUGGUGCA-GGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 164846 | 0.72 | 0.471899 |
Target: 5'- -aCCGCgAUgGCCGCCGCUAUGUUa- -3' miRNA: 3'- caGGCGgUAgCGGCGGUGGUGCAGgu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 76374 | 0.71 | 0.480773 |
Target: 5'- aUCgCGCCggCGCCGCCgcggaugagcucGCCGcCGUCCGa -3' miRNA: 3'- cAG-GCGGuaGCGGCGG------------UGGU-GCAGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 121235 | 0.71 | 0.496947 |
Target: 5'- -gCCGCCAcgccagguucgaCGCCGCCACCucuAgGUCCAg -3' miRNA: 3'- caGGCGGUa-----------GCGGCGGUGG---UgCAGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 110193 | 0.71 | 0.498759 |
Target: 5'- -gCCGCgAcgCGCCGCCGCC-CGUCgAg -3' miRNA: 3'- caGGCGgUa-GCGGCGGUGGuGCAGgU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 196450 | 0.71 | 0.498759 |
Target: 5'- cGUCCGCCA-CGCgguagaacuucuCGCgCugCAUGUCCAg -3' miRNA: 3'- -CAGGCGGUaGCG------------GCG-GugGUGCAGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 146458 | 0.71 | 0.498759 |
Target: 5'- -cCCGCCGUCGCCGuCUACUcCGUgCCc -3' miRNA: 3'- caGGCGGUAGCGGC-GGUGGuGCA-GGu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 211955 | 0.71 | 0.498759 |
Target: 5'- -gCgGCgGUCGCUGCCGCCAuCGUCgAg -3' miRNA: 3'- caGgCGgUAGCGGCGGUGGU-GCAGgU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home