miRNA display CGI


Results 81 - 100 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 207115 0.71 0.507864
Target:  5'- -aCCGCCGacCGCCGCCacugACCGCGUUgGg -3'
miRNA:   3'- caGGCGGUa-GCGGCGG----UGGUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 131893 0.71 0.507864
Target:  5'- aUgCGCac-CGCCGCCGCCugGUUCGa -3'
miRNA:   3'- cAgGCGguaGCGGCGGUGGugCAGGU- -5'
16077 3' -61 NC_004065.1 + 48905 0.71 0.517038
Target:  5'- cUCC-CCGcCGCCGCCACCcCGUCa- -3'
miRNA:   3'- cAGGcGGUaGCGGCGGUGGuGCAGgu -5'
16077 3' -61 NC_004065.1 + 96007 0.71 0.517038
Target:  5'- -gCCGCCAUCGCacuucccacuacCGCCcCCGCGUgCGu -3'
miRNA:   3'- caGGCGGUAGCG------------GCGGuGGUGCAgGU- -5'
16077 3' -61 NC_004065.1 + 90125 0.71 0.517038
Target:  5'- -gCCGCCGgccggaggcccCGCgGCCACCuCGUCCGu -3'
miRNA:   3'- caGGCGGUa----------GCGgCGGUGGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 56042 0.71 0.517038
Target:  5'- uGUUCGUCAUCGUCGCCGUCGCGaUCAu -3'
miRNA:   3'- -CAGGCGGUAGCGGCGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 199639 0.71 0.517038
Target:  5'- uGUCCGCgAU--CCGCCAggUCACGUCCAu -3'
miRNA:   3'- -CAGGCGgUAgcGGCGGU--GGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 124814 0.71 0.520727
Target:  5'- cGUCCGCCGggCGUCcacgaacagcggcuCCGCCugGUCCAu -3'
miRNA:   3'- -CAGGCGGUa-GCGGc-------------GGUGGugCAGGU- -5'
16077 3' -61 NC_004065.1 + 77361 0.71 0.526278
Target:  5'- cUCgCGCCGUCGCCGCCGuuGgcUCCGa -3'
miRNA:   3'- cAG-GCGGUAGCGGCGGUggUgcAGGU- -5'
16077 3' -61 NC_004065.1 + 102781 0.7 0.53558
Target:  5'- cUCgCGCuCAUCaucCCGCCACCGCGcCCGa -3'
miRNA:   3'- cAG-GCG-GUAGc--GGCGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 115196 0.7 0.53558
Target:  5'- aUCCgGCCGUgGCCGCCGCgACGgggcauaccgCCGg -3'
miRNA:   3'- cAGG-CGGUAgCGGCGGUGgUGCa---------GGU- -5'
16077 3' -61 NC_004065.1 + 100001 0.7 0.544
Target:  5'- cUUCGUCGUagcCGCCGCCGCCGuacagcaucgccuCGUCCGc -3'
miRNA:   3'- cAGGCGGUA---GCGGCGGUGGU-------------GCAGGU- -5'
16077 3' -61 NC_004065.1 + 170451 0.7 0.544938
Target:  5'- -gCCGCCGgaggcgccuUCGCUGCCGCCGCaGaCCGc -3'
miRNA:   3'- caGGCGGU---------AGCGGCGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 84092 0.7 0.544938
Target:  5'- cUCCGCCGUCcguuucugGUCGCgaCACCaaGCGUCCAu -3'
miRNA:   3'- cAGGCGGUAG--------CGGCG--GUGG--UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 221277 0.7 0.544938
Target:  5'- -cCUGCC---GCCGCCACCACGgccUCCGg -3'
miRNA:   3'- caGGCGGuagCGGCGGUGGUGC---AGGU- -5'
16077 3' -61 NC_004065.1 + 153285 0.7 0.544939
Target:  5'- -gCCGCCggCGCCG-CGCC-CGUCCc -3'
miRNA:   3'- caGGCGGuaGCGGCgGUGGuGCAGGu -5'
16077 3' -61 NC_004065.1 + 154370 0.7 0.544939
Target:  5'- -gCCGCC-UCGCCGaCCuCCACuUCCAc -3'
miRNA:   3'- caGGCGGuAGCGGC-GGuGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 101456 0.7 0.550579
Target:  5'- -gCCGCCgacGUCGCUGCCGCUGCGggcgcagacacagCCAc -3'
miRNA:   3'- caGGCGG---UAGCGGCGGUGGUGCa------------GGU- -5'
16077 3' -61 NC_004065.1 + 29239 0.7 0.554349
Target:  5'- --aCGCCGUCGcCCGCCACCGCc---- -3'
miRNA:   3'- cagGCGGUAGC-GGCGGUGGUGcaggu -5'
16077 3' -61 NC_004065.1 + 146030 0.7 0.563807
Target:  5'- aGUCCaUCAUCGCCGaaggCGCCACGaCCGa -3'
miRNA:   3'- -CAGGcGGUAGCGGCg---GUGGUGCaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.