miRNA display CGI


Results 21 - 40 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 207530 0.66 0.805914
Target:  5'- gGUCCuCC-UCGCCGCgCGcuCCGCGUCg- -3'
miRNA:   3'- -CAGGcGGuAGCGGCG-GU--GGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 137859 0.66 0.805914
Target:  5'- -aCCGCgucgAUCGCCGCCGacaGCGUCgGg -3'
miRNA:   3'- caGGCGg---UAGCGGCGGUgg-UGCAGgU- -5'
16077 3' -61 NC_004065.1 + 156789 0.66 0.805914
Target:  5'- aUUCGUuagaCAggGUCGUCACCGCGUCCu -3'
miRNA:   3'- cAGGCG----GUagCGGCGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 63483 0.66 0.805914
Target:  5'- -gCCGCCAggCGCCGUCgcgcaGCCAgGUgCGg -3'
miRNA:   3'- caGGCGGUa-GCGGCGG-----UGGUgCAgGU- -5'
16077 3' -61 NC_004065.1 + 213479 0.66 0.805914
Target:  5'- aGUCggaGCgGUCGCCGCgACCGuCGacgCCAc -3'
miRNA:   3'- -CAGg--CGgUAGCGGCGgUGGU-GCa--GGU- -5'
16077 3' -61 NC_004065.1 + 29039 0.66 0.805914
Target:  5'- -aCCGgCGUCGCgaccCGUCACCACGcaCCGa -3'
miRNA:   3'- caGGCgGUAGCG----GCGGUGGUGCa-GGU- -5'
16077 3' -61 NC_004065.1 + 205965 0.66 0.79751
Target:  5'- -gCCGCUcaUGCUGCCGCCGCucaCCAu -3'
miRNA:   3'- caGGCGGuaGCGGCGGUGGUGca-GGU- -5'
16077 3' -61 NC_004065.1 + 155432 0.66 0.79751
Target:  5'- -gCCGCCA---CCGCCACCgACGgcaCCAa -3'
miRNA:   3'- caGGCGGUagcGGCGGUGG-UGCa--GGU- -5'
16077 3' -61 NC_004065.1 + 126027 0.66 0.79751
Target:  5'- --gCGCCAcgaGCCGCuCGCCcaccuucagcACGUCCAu -3'
miRNA:   3'- cagGCGGUag-CGGCG-GUGG----------UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 78659 0.66 0.79751
Target:  5'- -gCCGCCAgcgcagCgGCCGgCGCCGCGgcgCCc -3'
miRNA:   3'- caGGCGGUa-----G-CGGCgGUGGUGCa--GGu -5'
16077 3' -61 NC_004065.1 + 35664 0.66 0.79751
Target:  5'- -gCCGCCgAUCGCCacGUCGCuCGCGagCCAg -3'
miRNA:   3'- caGGCGG-UAGCGG--CGGUG-GUGCa-GGU- -5'
16077 3' -61 NC_004065.1 + 52182 0.66 0.79751
Target:  5'- uUCUGaCUGUC-CCGCCGCCugGUuaaCCAa -3'
miRNA:   3'- cAGGC-GGUAGcGGCGGUGGugCA---GGU- -5'
16077 3' -61 NC_004065.1 + 173890 0.66 0.796662
Target:  5'- -cUCGCCGagGCugcagaaggcgagCGCCGCCGuCGUCCGg -3'
miRNA:   3'- caGGCGGUagCG-------------GCGGUGGU-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 111858 0.66 0.796662
Target:  5'- ---aGCCGUgacgGCCGCCGCCGCGgucucggugacaaUCCAu -3'
miRNA:   3'- caggCGGUAg---CGGCGGUGGUGC-------------AGGU- -5'
16077 3' -61 NC_004065.1 + 171440 0.66 0.796662
Target:  5'- cUCCGCCGUCGucggcgagcucauCCGCUggAUCGCG-CCGa -3'
miRNA:   3'- cAGGCGGUAGC-------------GGCGG--UGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 114934 0.66 0.794963
Target:  5'- -aCCGCCggugaucaucaucaGUCGgCGCCGCCgGCcUCCAg -3'
miRNA:   3'- caGGCGG--------------UAGCgGCGGUGG-UGcAGGU- -5'
16077 3' -61 NC_004065.1 + 63990 0.66 0.794963
Target:  5'- cUCCGCCGUgcaacugcagacggUGaCgGCCucCCGCGUCCGu -3'
miRNA:   3'- cAGGCGGUA--------------GC-GgCGGu-GGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 210461 0.66 0.788974
Target:  5'- --aCGCUAcCGCCGCCACCGacacCCAc -3'
miRNA:   3'- cagGCGGUaGCGGCGGUGGUgca-GGU- -5'
16077 3' -61 NC_004065.1 + 191858 0.66 0.788974
Target:  5'- -gCCGCUggCGCgGaUCGCCGCGUCUu -3'
miRNA:   3'- caGGCGGuaGCGgC-GGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 7768 0.66 0.788974
Target:  5'- cGUCagGCCGUCGCUGUUcCCgACGUUCGa -3'
miRNA:   3'- -CAGg-CGGUAGCGGCGGuGG-UGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.