miRNA display CGI


Results 41 - 60 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 210461 0.66 0.788974
Target:  5'- --aCGCUAcCGCCGCCACCGacacCCAc -3'
miRNA:   3'- cagGCGGUaGCGGCGGUGGUgca-GGU- -5'
16077 3' -61 NC_004065.1 + 209306 0.66 0.788974
Target:  5'- -gCCGUCGUCGCCGUCGgUGcCGUCg- -3'
miRNA:   3'- caGGCGGUAGCGGCGGUgGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 64149 0.66 0.788974
Target:  5'- -cCCGCUg--GCCGCCgACCugGUCUc -3'
miRNA:   3'- caGGCGGuagCGGCGG-UGGugCAGGu -5'
16077 3' -61 NC_004065.1 + 191858 0.66 0.788974
Target:  5'- -gCCGCUggCGCgGaUCGCCGCGUCUu -3'
miRNA:   3'- caGGCGGuaGCGgC-GGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 131996 0.66 0.788974
Target:  5'- aGUCCGCgAUCGaCGUCuCCGagcUGUCCAg -3'
miRNA:   3'- -CAGGCGgUAGCgGCGGuGGU---GCAGGU- -5'
16077 3' -61 NC_004065.1 + 71777 0.66 0.780312
Target:  5'- --gCGUCgAUCGCCGCCACUcugcagACGUUCu -3'
miRNA:   3'- cagGCGG-UAGCGGCGGUGG------UGCAGGu -5'
16077 3' -61 NC_004065.1 + 126376 0.66 0.780312
Target:  5'- cUCCGUCAcgcaGuCCGUCAgCAUGUCCAg -3'
miRNA:   3'- cAGGCGGUag--C-GGCGGUgGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 88618 0.66 0.780312
Target:  5'- cUCgGCgAUgGCCGCCAgcucgggauCCACGUCgAg -3'
miRNA:   3'- cAGgCGgUAgCGGCGGU---------GGUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 143227 0.66 0.780312
Target:  5'- -gCCGCguUCGCCGC-GCC-CGUCUu -3'
miRNA:   3'- caGGCGguAGCGGCGgUGGuGCAGGu -5'
16077 3' -61 NC_004065.1 + 117468 0.66 0.780312
Target:  5'- cUCCGCgGccgcUCGCCGCCACCG-GUg-- -3'
miRNA:   3'- cAGGCGgU----AGCGGCGGUGGUgCAggu -5'
16077 3' -61 NC_004065.1 + 36376 0.66 0.780312
Target:  5'- -gUCGCUAUCgucgcucucgcuGCCGCCGCCACuUUCGc -3'
miRNA:   3'- caGGCGGUAG------------CGGCGGUGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 140858 0.66 0.780312
Target:  5'- -aCgGCCcugAagGCCGCCGCCAgcgaGUCCAu -3'
miRNA:   3'- caGgCGG---UagCGGCGGUGGUg---CAGGU- -5'
16077 3' -61 NC_004065.1 + 110490 0.66 0.780312
Target:  5'- uGUUCGCCcUgGCCcuCgACCACGUCCc -3'
miRNA:   3'- -CAGGCGGuAgCGGc-GgUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 152975 0.66 0.780312
Target:  5'- cUCgGCCGuguucUCGUCGCCGauCCGCG-CCAg -3'
miRNA:   3'- cAGgCGGU-----AGCGGCGGU--GGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 210617 0.66 0.780312
Target:  5'- cUCCGCCGaCGCCGgCGgguaACGUCCc -3'
miRNA:   3'- cAGGCGGUaGCGGCgGUgg--UGCAGGu -5'
16077 3' -61 NC_004065.1 + 152037 0.66 0.780312
Target:  5'- cUCCGUCccggggcggcUCGCCGCgGCCAgCGUCUc -3'
miRNA:   3'- cAGGCGGu---------AGCGGCGgUGGU-GCAGGu -5'
16077 3' -61 NC_004065.1 + 203672 0.66 0.780312
Target:  5'- -gCCGCCGUCGCCagcGCCgaugacgacgACgACGUCg- -3'
miRNA:   3'- caGGCGGUAGCGG---CGG----------UGgUGCAGgu -5'
16077 3' -61 NC_004065.1 + 141313 0.66 0.780312
Target:  5'- aUCCGCCGcucgCGCCGCgAgaACGUCa- -3'
miRNA:   3'- cAGGCGGUa---GCGGCGgUggUGCAGgu -5'
16077 3' -61 NC_004065.1 + 126726 0.66 0.780312
Target:  5'- -aCCGCUga-GCCuGCCGCCGCGgCCu -3'
miRNA:   3'- caGGCGGuagCGG-CGGUGGUGCaGGu -5'
16077 3' -61 NC_004065.1 + 126000 0.66 0.779439
Target:  5'- gGUCCGCCcgaaucucccacuGUCGUCGCCagacucagucuuGCCGCaggCCAu -3'
miRNA:   3'- -CAGGCGG-------------UAGCGGCGG------------UGGUGca-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.