miRNA display CGI


Results 61 - 80 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 168681 0.66 0.771532
Target:  5'- cUCCGUCuUCGCCcggGUCGCCGCGgcucucgCCGu -3'
miRNA:   3'- cAGGCGGuAGCGG---CGGUGGUGCa------GGU- -5'
16077 3' -61 NC_004065.1 + 63977 0.66 0.771532
Target:  5'- aUCCGCCA-CGCaggCGUCACagCugGUCCGc -3'
miRNA:   3'- cAGGCGGUaGCG---GCGGUG--GugCAGGU- -5'
16077 3' -61 NC_004065.1 + 47465 0.66 0.771532
Target:  5'- aUCCGCCAUauuggaacaGCCGCCAUauugguaACGccgCCAu -3'
miRNA:   3'- cAGGCGGUAg--------CGGCGGUGg------UGCa--GGU- -5'
16077 3' -61 NC_004065.1 + 138854 0.66 0.771532
Target:  5'- uUCCGCgGcCGUCGCCugCgACGaUCCGu -3'
miRNA:   3'- cAGGCGgUaGCGGCGGugG-UGC-AGGU- -5'
16077 3' -61 NC_004065.1 + 149703 0.66 0.771532
Target:  5'- --aCGCCGggggGCCGCgGCCGCG-CCGg -3'
miRNA:   3'- cagGCGGUag--CGGCGgUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 168501 0.66 0.771532
Target:  5'- -aCUGCgAUCGCCugcgggaugcuGUCGCCGCGUUCu -3'
miRNA:   3'- caGGCGgUAGCGG-----------CGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 110855 0.66 0.771532
Target:  5'- -gCCGCCcgcGUCGaaCCGUCGCCAUG-CCGa -3'
miRNA:   3'- caGGCGG---UAGC--GGCGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 170883 0.67 0.762643
Target:  5'- cUCuCGCCGUCGUCGCC-UCGCGcUCg- -3'
miRNA:   3'- cAG-GCGGUAGCGGCGGuGGUGC-AGgu -5'
16077 3' -61 NC_004065.1 + 152414 0.67 0.762643
Target:  5'- gGUCCGUCAgCGUCGUguugaaCAUCACGUUCGu -3'
miRNA:   3'- -CAGGCGGUaGCGGCG------GUGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 121045 0.67 0.762643
Target:  5'- -gCCGCgAUCGUCGCgUACUugGUCgCGa -3'
miRNA:   3'- caGGCGgUAGCGGCG-GUGGugCAG-GU- -5'
16077 3' -61 NC_004065.1 + 76811 0.67 0.762643
Target:  5'- -aCCGuUCAUCGCCGUCGCgGCGcUCgCGa -3'
miRNA:   3'- caGGC-GGUAGCGGCGGUGgUGC-AG-GU- -5'
16077 3' -61 NC_004065.1 + 210972 0.67 0.757259
Target:  5'- -cUCGUCGUCacagaugugggccaCCGCCGCCGuCGUCCAa -3'
miRNA:   3'- caGGCGGUAGc-------------GGCGGUGGU-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 68202 0.67 0.75365
Target:  5'- cGUCCGCCcgC-CCGuCCGUC-CGUCCAu -3'
miRNA:   3'- -CAGGCGGuaGcGGC-GGUGGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 152154 0.67 0.75365
Target:  5'- cUCCGCCAUgGUCa--GCUGCGUCCGg -3'
miRNA:   3'- cAGGCGGUAgCGGcggUGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 152919 0.67 0.75365
Target:  5'- uGUCgGCgG-CGCUGCCGCCGCGg-CAa -3'
miRNA:   3'- -CAGgCGgUaGCGGCGGUGGUGCagGU- -5'
16077 3' -61 NC_004065.1 + 65269 0.67 0.75365
Target:  5'- --aCGCCAcguacCGCacgGCCGCgGCGUCCAg -3'
miRNA:   3'- cagGCGGUa----GCGg--CGGUGgUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 173878 0.67 0.75365
Target:  5'- cGUCaCGCCGUguguguggGCCGCCGCCGCcUCa- -3'
miRNA:   3'- -CAG-GCGGUAg-------CGGCGGUGGUGcAGgu -5'
16077 3' -61 NC_004065.1 + 131783 0.67 0.75365
Target:  5'- cGUCCcgaGCCGUCGUCGgCACCcuCGaUCCu -3'
miRNA:   3'- -CAGG---CGGUAGCGGCgGUGGu-GC-AGGu -5'
16077 3' -61 NC_004065.1 + 63852 0.67 0.748209
Target:  5'- cGUUCGCCAUgGCCGCguucggaaggaccacCACCcgcACGUCa- -3'
miRNA:   3'- -CAGGCGGUAgCGGCG---------------GUGG---UGCAGgu -5'
16077 3' -61 NC_004065.1 + 131627 0.67 0.744563
Target:  5'- -gCCGCCAcucucaUCGCCcuccucGCCACCACc-CCAg -3'
miRNA:   3'- caGGCGGU------AGCGG------CGGUGGUGcaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.