Results 81 - 100 of 287 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16077 | 3' | -61 | NC_004065.1 | + | 87704 | 0.67 | 0.744563 |
Target: 5'- -cCCGCCGguaguaUCGCUGCCGguCCcgauGCGUCCc -3' miRNA: 3'- caGGCGGU------AGCGGCGGU--GG----UGCAGGu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 62030 | 0.67 | 0.744563 |
Target: 5'- -gUCGCCAUCGCUGCUGCUGCuGguggugCCGa -3' miRNA: 3'- caGGCGGUAGCGGCGGUGGUG-Ca-----GGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 162519 | 0.67 | 0.744563 |
Target: 5'- aUCCGCacgaGCCGCCggGCCAgGUCUc -3' miRNA: 3'- cAGGCGguagCGGCGG--UGGUgCAGGu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 152603 | 0.67 | 0.744563 |
Target: 5'- cGUCCGUCAgcagCGCCcgggucaCCGCCAUGUgcgCCAg -3' miRNA: 3'- -CAGGCGGUa---GCGGc------GGUGGUGCA---GGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 56574 | 0.67 | 0.744563 |
Target: 5'- --gCGUCGagCGCCGCCACCgguACGUCgAa -3' miRNA: 3'- cagGCGGUa-GCGGCGGUGG---UGCAGgU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 131627 | 0.67 | 0.744563 |
Target: 5'- -gCCGCCAcucucaUCGCCcuccucGCCACCACc-CCAg -3' miRNA: 3'- caGGCGGU------AGCGG------CGGUGGUGcaGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 193839 | 0.67 | 0.744563 |
Target: 5'- -aCCGCCAccauUCcugcuGCCGUCGCUuCGUCCGc -3' miRNA: 3'- caGGCGGU----AG-----CGGCGGUGGuGCAGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 199965 | 0.67 | 0.744563 |
Target: 5'- -gCCGCCAUCaacgauaaCGCUGCCGCuGUCCu -3' miRNA: 3'- caGGCGGUAGcg------GCGGUGGUG-CAGGu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 167374 | 0.67 | 0.743649 |
Target: 5'- -gCUGCCGUCuCCGCCGCCAaugcugcUGUCa- -3' miRNA: 3'- caGGCGGUAGcGGCGGUGGU-------GCAGgu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 32242 | 0.67 | 0.735388 |
Target: 5'- -gCCGUCGgacUCGCCGCCAUCAuCGgacggcUCCGa -3' miRNA: 3'- caGGCGGU---AGCGGCGGUGGU-GC------AGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 225918 | 0.67 | 0.735388 |
Target: 5'- uUCUGCUGUUGCCGCUucCCGuCGUCUc -3' miRNA: 3'- cAGGCGGUAGCGGCGGu-GGU-GCAGGu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 197713 | 0.67 | 0.735388 |
Target: 5'- --aCGCCGUCGCgGCCGCCGUGagcUUCAc -3' miRNA: 3'- cagGCGGUAGCGgCGGUGGUGC---AGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 17072 | 0.67 | 0.735388 |
Target: 5'- -aCCGCC-UCuCCGaCCGCCACcUCCGa -3' miRNA: 3'- caGGCGGuAGcGGC-GGUGGUGcAGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 109472 | 0.67 | 0.735388 |
Target: 5'- -cCCGCUcgCGCCGaCCGCCGcCGgcacaCCGg -3' miRNA: 3'- caGGCGGuaGCGGC-GGUGGU-GCa----GGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 157893 | 0.67 | 0.735388 |
Target: 5'- cUCCuGCguguuCAUCGCCGCguCCAcCGUCCu -3' miRNA: 3'- cAGG-CG-----GUAGCGGCGguGGU-GCAGGu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 6806 | 0.67 | 0.735388 |
Target: 5'- -aCCG-CGUCGCCGCUACCGCcgacgacUCCc -3' miRNA: 3'- caGGCgGUAGCGGCGGUGGUGc------AGGu -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 168299 | 0.67 | 0.734466 |
Target: 5'- -cCCGCCAaggagcgcauggcUCGCaucCGCCGCUACG-CCGc -3' miRNA: 3'- caGGCGGU-------------AGCG---GCGGUGGUGCaGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 130893 | 0.67 | 0.726134 |
Target: 5'- -aCCGCCGUCgGCCGC-ACCuGCGUugCCGu -3' miRNA: 3'- caGGCGGUAG-CGGCGgUGG-UGCA--GGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 21966 | 0.67 | 0.726134 |
Target: 5'- -gCCGUCGUCGgCaggacggugaggGCCGCCACGgCCAc -3' miRNA: 3'- caGGCGGUAGCgG------------CGGUGGUGCaGGU- -5' |
|||||||
16077 | 3' | -61 | NC_004065.1 | + | 210099 | 0.67 | 0.725205 |
Target: 5'- uGUCCGUCGUaaccaCCGCCACCAccgcuacCGUCUu -3' miRNA: 3'- -CAGGCGGUAgc---GGCGGUGGU-------GCAGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home