miRNA display CGI


Results 101 - 120 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 63882 0.67 0.716809
Target:  5'- -gCCGCUGcCGCCGgCGCCgACGUCUc -3'
miRNA:   3'- caGGCGGUaGCGGCgGUGG-UGCAGGu -5'
16077 3' -61 NC_004065.1 + 65651 0.67 0.716809
Target:  5'- -cCCGCUGcCGCUGCCGCCGCaggaagaUCCGa -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGc------AGGU- -5'
16077 3' -61 NC_004065.1 + 81152 0.67 0.716809
Target:  5'- cGUCC-CCcUCGCCccccGCCGCCGCcUCCu -3'
miRNA:   3'- -CAGGcGGuAGCGG----CGGUGGUGcAGGu -5'
16077 3' -61 NC_004065.1 + 128782 0.67 0.716809
Target:  5'- --gCGCCGUCGCCGgcggCACCucugGCGUUCAg -3'
miRNA:   3'- cagGCGGUAGCGGCg---GUGG----UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 34132 0.67 0.716809
Target:  5'- aGUCCGCCGucUCGUCGaCgACCA-GUUCAa -3'
miRNA:   3'- -CAGGCGGU--AGCGGC-GgUGGUgCAGGU- -5'
16077 3' -61 NC_004065.1 + 130661 0.67 0.716809
Target:  5'- aGUCggCGCCGUCGCUGCCAacgcuCGUCgGg -3'
miRNA:   3'- -CAG--GCGGUAGCGGCGGUggu--GCAGgU- -5'
16077 3' -61 NC_004065.1 + 199325 0.68 0.707418
Target:  5'- cGUCCGCCAccUCGaCGUCGCgACGgaCCAg -3'
miRNA:   3'- -CAGGCGGU--AGCgGCGGUGgUGCa-GGU- -5'
16077 3' -61 NC_004065.1 + 164577 0.68 0.707418
Target:  5'- -aCCGCUucgCGCUccagaGCCACCACGgCCGc -3'
miRNA:   3'- caGGCGGua-GCGG-----CGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 123765 0.68 0.707418
Target:  5'- gGUgCGCCGcgCGCCgGUCGCCugucggacccagGCGUCCAc -3'
miRNA:   3'- -CAgGCGGUa-GCGG-CGGUGG------------UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 54113 0.68 0.707418
Target:  5'- -gCCGUCAUCGCCGCgACgAucauCGUCUc -3'
miRNA:   3'- caGGCGGUAGCGGCGgUGgU----GCAGGu -5'
16077 3' -61 NC_004065.1 + 99239 0.68 0.707418
Target:  5'- aUCCGCC-UCGCgaaCGCCugCAgGUUCu -3'
miRNA:   3'- cAGGCGGuAGCG---GCGGugGUgCAGGu -5'
16077 3' -61 NC_004065.1 + 101592 0.68 0.701756
Target:  5'- cUCCGCCgcgcucagacucgguGgcggCGCCGCCGCCGCuG-CCGc -3'
miRNA:   3'- cAGGCGG---------------Ua---GCGGCGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 186436 0.68 0.697972
Target:  5'- uUCCuaCCGUUGCCGCCGCCGC--CCu -3'
miRNA:   3'- cAGGc-GGUAGCGGCGGUGGUGcaGGu -5'
16077 3' -61 NC_004065.1 + 193913 0.68 0.697972
Target:  5'- -gCCGCCGgcagcggcccCGuuGCCGCCACGguuguuUCCAc -3'
miRNA:   3'- caGGCGGUa---------GCggCGGUGGUGC------AGGU- -5'
16077 3' -61 NC_004065.1 + 84582 0.68 0.697972
Target:  5'- --aCGCCAUCGCCucuCCAUCGCGauUCCc -3'
miRNA:   3'- cagGCGGUAGCGGc--GGUGGUGC--AGGu -5'
16077 3' -61 NC_004065.1 + 33621 0.68 0.697972
Target:  5'- -gCCGgCAUgGCCaagGCCAUCGCGUUCGg -3'
miRNA:   3'- caGGCgGUAgCGG---CGGUGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 130075 0.68 0.697972
Target:  5'- uUUCGCagcagcaGCCGCCGCCGCGgcggUCCGg -3'
miRNA:   3'- cAGGCGguag---CGGCGGUGGUGC----AGGU- -5'
16077 3' -61 NC_004065.1 + 74621 0.68 0.695128
Target:  5'- aGUUC-CCGgaacCGCCGCCACCGCuacccgggucugagGUCCGg -3'
miRNA:   3'- -CAGGcGGUa---GCGGCGGUGGUG--------------CAGGU- -5'
16077 3' -61 NC_004065.1 + 126320 0.68 0.69228
Target:  5'- -cCCGCCAggcgcucccCGCCGCCcACCGuguaggucuccggguUGUCCAg -3'
miRNA:   3'- caGGCGGUa--------GCGGCGG-UGGU---------------GCAGGU- -5'
16077 3' -61 NC_004065.1 + 88363 0.68 0.688476
Target:  5'- -aCCGCUcUCGuCCGCgGCCGCGgcaCCGc -3'
miRNA:   3'- caGGCGGuAGC-GGCGgUGGUGCa--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.