miRNA display CGI


Results 21 - 40 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 34132 0.67 0.716809
Target:  5'- aGUCCGCCGucUCGUCGaCgACCA-GUUCAa -3'
miRNA:   3'- -CAGGCGGU--AGCGGC-GgUGGUgCAGGU- -5'
16077 3' -61 NC_004065.1 + 35664 0.66 0.79751
Target:  5'- -gCCGCCgAUCGCCacGUCGCuCGCGagCCAg -3'
miRNA:   3'- caGGCGG-UAGCGG--CGGUG-GUGCa-GGU- -5'
16077 3' -61 NC_004065.1 + 36376 0.66 0.780312
Target:  5'- -gUCGCUAUCgucgcucucgcuGCCGCCGCCACuUUCGc -3'
miRNA:   3'- caGGCGGUAG------------CGGCGGUGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 36525 0.66 0.813358
Target:  5'- cUCCGCCAgguggaacuacUCGaCCGCCgacaucggggucuACUACGUCa- -3'
miRNA:   3'- cAGGCGGU-----------AGC-GGCGG-------------UGGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 36868 0.68 0.678939
Target:  5'- --aCGCgCAUCGCCGCCcaGCagcagGCGUCCu -3'
miRNA:   3'- cagGCG-GUAGCGGCGG--UGg----UGCAGGu -5'
16077 3' -61 NC_004065.1 + 38501 0.68 0.677983
Target:  5'- --aCGCCGUCGCUGUCACCggaguugAUGcCCAg -3'
miRNA:   3'- cagGCGGUAGCGGCGGUGG-------UGCaGGU- -5'
16077 3' -61 NC_004065.1 + 43004 0.7 0.592414
Target:  5'- --aCGCCG-CGCCGCCGCCACuaaCAg -3'
miRNA:   3'- cagGCGGUaGCGGCGGUGGUGcagGU- -5'
16077 3' -61 NC_004065.1 + 43656 0.68 0.65977
Target:  5'- cUCCGCCGUCGCa-UCACCGCGa--- -3'
miRNA:   3'- cAGGCGGUAGCGgcGGUGGUGCaggu -5'
16077 3' -61 NC_004065.1 + 44299 0.68 0.688476
Target:  5'- aUCCGCCugcugUGCCGCCucaagaucuucuACCagaACGUCCu -3'
miRNA:   3'- cAGGCGGua---GCGGCGG------------UGG---UGCAGGu -5'
16077 3' -61 NC_004065.1 + 45206 0.75 0.294976
Target:  5'- -gCCGCCGcUGCCGCCACCGCcaCCGu -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGcaGGU- -5'
16077 3' -61 NC_004065.1 + 47465 0.66 0.771532
Target:  5'- aUCCGCCAUauuggaacaGCCGCCAUauugguaACGccgCCAu -3'
miRNA:   3'- cAGGCGGUAg--------CGGCGGUGg------UGCa--GGU- -5'
16077 3' -61 NC_004065.1 + 48905 0.71 0.517038
Target:  5'- cUCC-CCGcCGCCGCCACCcCGUCa- -3'
miRNA:   3'- cAGGcGGUaGCGGCGGUGGuGCAGgu -5'
16077 3' -61 NC_004065.1 + 52182 0.66 0.79751
Target:  5'- uUCUGaCUGUC-CCGCCGCCugGUuaaCCAa -3'
miRNA:   3'- cAGGC-GGUAGcGGCGGUGGugCA---GGU- -5'
16077 3' -61 NC_004065.1 + 53851 0.69 0.621251
Target:  5'- cUCCGCC---GCCGUCGCCAuCGUCuCAg -3'
miRNA:   3'- cAGGCGGuagCGGCGGUGGU-GCAG-GU- -5'
16077 3' -61 NC_004065.1 + 54113 0.68 0.707418
Target:  5'- -gCCGUCAUCGCCGCgACgAucauCGUCUc -3'
miRNA:   3'- caGGCGGUAGCGGCGgUGgU----GCAGGu -5'
16077 3' -61 NC_004065.1 + 55982 0.66 0.805914
Target:  5'- -aCCGCCAUCGUCGUaCAUguaCACGaagCCAu -3'
miRNA:   3'- caGGCGGUAGCGGCG-GUG---GUGCa--GGU- -5'
16077 3' -61 NC_004065.1 + 56042 0.71 0.517038
Target:  5'- uGUUCGUCAUCGUCGCCGUCGCGaUCAu -3'
miRNA:   3'- -CAGGCGGUAGCGGCGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 56574 0.67 0.744563
Target:  5'- --gCGUCGagCGCCGCCACCgguACGUCgAa -3'
miRNA:   3'- cagGCGGUa-GCGGCGGUGG---UGCAGgU- -5'
16077 3' -61 NC_004065.1 + 56985 0.66 0.814178
Target:  5'- aUCCugaugGCCGUgGCCGCCaugagagcACCGCaUCCGa -3'
miRNA:   3'- cAGG-----CGGUAgCGGCGG--------UGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 57762 0.74 0.365041
Target:  5'- -aUCGUCGUCGCCGCCGCCGuCGcUCUc -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGU-GC-AGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.