miRNA display CGI


Results 41 - 60 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 58019 0.68 0.65977
Target:  5'- -gCCGCUucCGCCGCCACCuugauggucguCGUUCAc -3'
miRNA:   3'- caGGCGGuaGCGGCGGUGGu----------GCAGGU- -5'
16077 3' -61 NC_004065.1 + 58063 0.81 0.136919
Target:  5'- cUCCGCCGcCGCCGCCGCCACcGcCCGc -3'
miRNA:   3'- cAGGCGGUaGCGGCGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 59651 0.69 0.611623
Target:  5'- gGUCCaGCCGgucucggaGCaCGCCACCuCGUCCu -3'
miRNA:   3'- -CAGG-CGGUag------CG-GCGGUGGuGCAGGu -5'
16077 3' -61 NC_004065.1 + 61464 0.7 0.592414
Target:  5'- cUCCGUgAUgCGCugCGCCAUgGCGUCCAc -3'
miRNA:   3'- cAGGCGgUA-GCG--GCGGUGgUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 61466 0.8 0.147247
Target:  5'- -cCCGCUGUCGCCGCCGCCGCcgcugCCAc -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUGca---GGU- -5'
16077 3' -61 NC_004065.1 + 62030 0.67 0.744563
Target:  5'- -gUCGCCAUCGCUGCUGCUGCuGguggugCCGa -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUG-Ca-----GGU- -5'
16077 3' -61 NC_004065.1 + 63483 0.66 0.805914
Target:  5'- -gCCGCCAggCGCCGUCgcgcaGCCAgGUgCGg -3'
miRNA:   3'- caGGCGGUa-GCGGCGG-----UGGUgCAgGU- -5'
16077 3' -61 NC_004065.1 + 63852 0.67 0.748209
Target:  5'- cGUUCGCCAUgGCCGCguucggaaggaccacCACCcgcACGUCa- -3'
miRNA:   3'- -CAGGCGGUAgCGGCG---------------GUGG---UGCAGgu -5'
16077 3' -61 NC_004065.1 + 63882 0.67 0.716809
Target:  5'- -gCCGCUGcCGCCGgCGCCgACGUCUc -3'
miRNA:   3'- caGGCGGUaGCGGCgGUGG-UGCAGGu -5'
16077 3' -61 NC_004065.1 + 63977 0.66 0.771532
Target:  5'- aUCCGCCA-CGCaggCGUCACagCugGUCCGc -3'
miRNA:   3'- cAGGCGGUaGCG---GCGGUG--GugCAGGU- -5'
16077 3' -61 NC_004065.1 + 63990 0.66 0.794963
Target:  5'- cUCCGCCGUgcaacugcagacggUGaCgGCCucCCGCGUCCGu -3'
miRNA:   3'- cAGGCGGUA--------------GC-GgCGGu-GGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 64149 0.66 0.788974
Target:  5'- -cCCGCUg--GCCGCCgACCugGUCUc -3'
miRNA:   3'- caGGCGGuagCGGCGG-UGGugCAGGu -5'
16077 3' -61 NC_004065.1 + 65269 0.67 0.75365
Target:  5'- --aCGCCAcguacCGCacgGCCGCgGCGUCCAg -3'
miRNA:   3'- cagGCGGUa----GCGg--CGGUGgUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 65651 0.67 0.716809
Target:  5'- -cCCGCUGcCGCUGCCGCCGCaggaagaUCCGa -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGc------AGGU- -5'
16077 3' -61 NC_004065.1 + 66391 0.74 0.342866
Target:  5'- -gCUGCCGcCGCCGCCGCCGCucgaUCCGg -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGc---AGGU- -5'
16077 3' -61 NC_004065.1 + 66544 0.66 0.814178
Target:  5'- -gCCGCCAcCGgCGCCGCCgACGgagCUc -3'
miRNA:   3'- caGGCGGUaGCgGCGGUGG-UGCa--GGu -5'
16077 3' -61 NC_004065.1 + 66773 0.73 0.380366
Target:  5'- --gCGCCggCGCCGCCGCUGCG-CCGa -3'
miRNA:   3'- cagGCGGuaGCGGCGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 68202 0.67 0.75365
Target:  5'- cGUCCGCCcgC-CCGuCCGUC-CGUCCAu -3'
miRNA:   3'- -CAGGCGGuaGcGGC-GGUGGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 71777 0.66 0.780312
Target:  5'- --gCGUCgAUCGCCGCCACUcugcagACGUUCu -3'
miRNA:   3'- cagGCGG-UAGCGGCGGUGG------UGCAGGu -5'
16077 3' -61 NC_004065.1 + 72301 0.68 0.688476
Target:  5'- --aCGUugaCAUCGCCGCgACCGCgGUCCc -3'
miRNA:   3'- cagGCG---GUAGCGGCGgUGGUG-CAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.