miRNA display CGI


Results 61 - 80 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 73716 0.66 0.788974
Target:  5'- cUCCGCCGcCGCUGCUggcGCCACugcugCCGc -3'
miRNA:   3'- cAGGCGGUaGCGGCGG---UGGUGca---GGU- -5'
16077 3' -61 NC_004065.1 + 74621 0.68 0.695128
Target:  5'- aGUUC-CCGgaacCGCCGCCACCGCuacccgggucugagGUCCGg -3'
miRNA:   3'- -CAGGcGGUa---GCGGCGGUGGUG--------------CAGGU- -5'
16077 3' -61 NC_004065.1 + 75873 0.79 0.191424
Target:  5'- -gCCGCCGcCGCCGCCGCCACcGcCCGg -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 76013 0.69 0.621251
Target:  5'- --aCGUCGcCGCCGCCGCCGCGaaCAc -3'
miRNA:   3'- cagGCGGUaGCGGCGGUGGUGCagGU- -5'
16077 3' -61 NC_004065.1 + 76163 0.68 0.678939
Target:  5'- -aCCGUCGUCGUCGCgAUCAgCGUCg- -3'
miRNA:   3'- caGGCGGUAGCGGCGgUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 76374 0.71 0.480773
Target:  5'- aUCgCGCCggCGCCGCCgcggaugagcucGCCGcCGUCCGa -3'
miRNA:   3'- cAG-GCGGuaGCGGCGG------------UGGU-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 76774 0.73 0.404145
Target:  5'- cGUCCgGCgCAUCGCCGCCGCgACGgcgaacgCUAu -3'
miRNA:   3'- -CAGG-CG-GUAGCGGCGGUGgUGCa------GGU- -5'
16077 3' -61 NC_004065.1 + 76811 0.67 0.762643
Target:  5'- -aCCGuUCAUCGCCGUCGCgGCGcUCgCGa -3'
miRNA:   3'- caGGC-GGUAGCGGCGGUGgUGC-AG-GU- -5'
16077 3' -61 NC_004065.1 + 77361 0.71 0.526278
Target:  5'- cUCgCGCCGUCGCCGCCGuuGgcUCCGa -3'
miRNA:   3'- cAG-GCGGUAGCGGCGGUggUgcAGGU- -5'
16077 3' -61 NC_004065.1 + 77723 0.72 0.454405
Target:  5'- -cCCGCCGgcacCGCCGCCGCCGCa---- -3'
miRNA:   3'- caGGCGGUa---GCGGCGGUGGUGcaggu -5'
16077 3' -61 NC_004065.1 + 78659 0.66 0.79751
Target:  5'- -gCCGCCAgcgcagCgGCCGgCGCCGCGgcgCCc -3'
miRNA:   3'- caGGCGGUa-----G-CGGCgGUGGUGCa--GGu -5'
16077 3' -61 NC_004065.1 + 78909 0.72 0.463109
Target:  5'- -gCCGCCuUCGCUGCUGCCGuCGUCg- -3'
miRNA:   3'- caGGCGGuAGCGGCGGUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 80972 0.68 0.65977
Target:  5'- aUCgGCC--UGCCGCCGCCGuCGUCg- -3'
miRNA:   3'- cAGgCGGuaGCGGCGGUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 81152 0.67 0.716809
Target:  5'- cGUCC-CCcUCGCCccccGCCGCCGCcUCCu -3'
miRNA:   3'- -CAGGcGGuAGCGG----CGGUGGUGcAGGu -5'
16077 3' -61 NC_004065.1 + 81385 0.78 0.220143
Target:  5'- uGUUCGCCAUCgaGUCGCUGCCGCuGUCCAg -3'
miRNA:   3'- -CAGGCGGUAG--CGGCGGUGGUG-CAGGU- -5'
16077 3' -61 NC_004065.1 + 84092 0.7 0.544938
Target:  5'- cUCCGCCGUCcguuucugGUCGCgaCACCaaGCGUCCAu -3'
miRNA:   3'- cAGGCGGUAG--------CGGCG--GUGG--UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 84582 0.68 0.697972
Target:  5'- --aCGCCAUCGCCucuCCAUCGCGauUCCc -3'
miRNA:   3'- cagGCGGUAGCGGc--GGUGGUGC--AGGu -5'
16077 3' -61 NC_004065.1 + 85664 0.72 0.463109
Target:  5'- -aCCGCCAgCGCCGUcgaCAUCGCGUaCCAg -3'
miRNA:   3'- caGGCGGUaGCGGCG---GUGGUGCA-GGU- -5'
16077 3' -61 NC_004065.1 + 87529 0.7 0.582845
Target:  5'- ---aGCCGUCGacagaCCGCCACCcccuggcucGCGUCCAc -3'
miRNA:   3'- caggCGGUAGC-----GGCGGUGG---------UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 87704 0.67 0.744563
Target:  5'- -cCCGCCGguaguaUCGCUGCCGguCCcgauGCGUCCc -3'
miRNA:   3'- caGGCGGU------AGCGGCGGU--GG----UGCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.