miRNA display CGI


Results 81 - 100 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 88032 0.68 0.65977
Target:  5'- aUCCGCCGcgguaUCGUCGUCAUCGcCGUCg- -3'
miRNA:   3'- cAGGCGGU-----AGCGGCGGUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 88275 0.68 0.678939
Target:  5'- -cCCGCaCGUCGUCGCCguugaugagGCCgGCGUUCAc -3'
miRNA:   3'- caGGCG-GUAGCGGCGG---------UGG-UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 88363 0.68 0.688476
Target:  5'- -aCCGCUcUCGuCCGCgGCCGCGgcaCCGc -3'
miRNA:   3'- caGGCGGuAGC-GGCGgUGGUGCa--GGU- -5'
16077 3' -61 NC_004065.1 + 88393 0.69 0.621251
Target:  5'- -aCCGCCcuccGUCGCCgaGCCGCCACcG-CCGg -3'
miRNA:   3'- caGGCGG----UAGCGG--CGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 88618 0.66 0.780312
Target:  5'- cUCgGCgAUgGCCGCCAgcucgggauCCACGUCgAg -3'
miRNA:   3'- cAGgCGgUAgCGGCGGU---------GGUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 89253 0.73 0.412277
Target:  5'- cUCuCGUCAUCGUCGuccCCACCACGuUCCAg -3'
miRNA:   3'- cAG-GCGGUAGCGGC---GGUGGUGC-AGGU- -5'
16077 3' -61 NC_004065.1 + 90125 0.71 0.517038
Target:  5'- -gCCGCCGgccggaggcccCGCgGCCACCuCGUCCGu -3'
miRNA:   3'- caGGCGGUa----------GCGgCGGUGGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 90181 0.74 0.37265
Target:  5'- cUCCGCCGUCGcCCGCCucCCGgGacUCCAg -3'
miRNA:   3'- cAGGCGGUAGC-GGCGGu-GGUgC--AGGU- -5'
16077 3' -61 NC_004065.1 + 90395 0.73 0.380366
Target:  5'- -cCCGUCGUCGacaCGCCACCGC-UCCGc -3'
miRNA:   3'- caGGCGGUAGCg--GCGGUGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 90437 0.69 0.602008
Target:  5'- -aCgGCgAUCGCCGCgGCCACcUCCc -3'
miRNA:   3'- caGgCGgUAGCGGCGgUGGUGcAGGu -5'
16077 3' -61 NC_004065.1 + 91482 0.73 0.412277
Target:  5'- aGUCCGCC---GCCGCUcguGCCGCGUUCGa -3'
miRNA:   3'- -CAGGCGGuagCGGCGG---UGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 91682 0.68 0.6732
Target:  5'- -gUCGCCuugucgcagagcgacAUCGCgGCCACgAUGUCCGc -3'
miRNA:   3'- caGGCGG---------------UAGCGgCGGUGgUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 93370 0.77 0.252457
Target:  5'- -cCCGcCCGUCGCuCGCCACCAgGaUCCAc -3'
miRNA:   3'- caGGC-GGUAGCG-GCGGUGGUgC-AGGU- -5'
16077 3' -61 NC_004065.1 + 94470 0.7 0.592414
Target:  5'- -gCCGCCucccCGUCGuCCGCC-CGUCCGa -3'
miRNA:   3'- caGGCGGua--GCGGC-GGUGGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 94884 0.68 0.678939
Target:  5'- cGUCC-CCGUCGUCaucacCCGCCGCGcCCGc -3'
miRNA:   3'- -CAGGcGGUAGCGGc----GGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 95144 0.75 0.294976
Target:  5'- aGUCCGUagcgacaguucuCGUCGCCGCCGCCgugcaGgGUCCAg -3'
miRNA:   3'- -CAGGCG------------GUAGCGGCGGUGG-----UgCAGGU- -5'
16077 3' -61 NC_004065.1 + 96007 0.71 0.517038
Target:  5'- -gCCGCCAUCGCacuucccacuacCGCCcCCGCGUgCGu -3'
miRNA:   3'- caGGCGGUAGCG------------GCGGuGGUGCAgGU- -5'
16077 3' -61 NC_004065.1 + 96989 0.73 0.396114
Target:  5'- cGUCCGUCG-CGCUGCUGCgACGUCUg -3'
miRNA:   3'- -CAGGCGGUaGCGGCGGUGgUGCAGGu -5'
16077 3' -61 NC_004065.1 + 97692 0.75 0.314838
Target:  5'- -cUCGCgGUCGCUGCCGCCGCcgcccgggcuGUCCAg -3'
miRNA:   3'- caGGCGgUAGCGGCGGUGGUG----------CAGGU- -5'
16077 3' -61 NC_004065.1 + 97861 1.08 0.001902
Target:  5'- cGUCCGCCAUCGCCGCCACCACGUCCAg -3'
miRNA:   3'- -CAGGCGGUAGCGGCGGUGGUGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.