miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 229439 0.66 0.814178
Target:  5'- gGUCUGCCAccacgggguggCGCUGCCGCCAgcccCGUUg- -3'
miRNA:   3'- -CAGGCGGUa----------GCGGCGGUGGU----GCAGgu -5'
16077 3' -61 NC_004065.1 + 228223 0.7 0.563807
Target:  5'- -aCCGCgAUCGCCGCC---GCGUUCAg -3'
miRNA:   3'- caGGCGgUAGCGGCGGuggUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 226584 0.66 0.805914
Target:  5'- cUCCGUCcgaGUCGaaccuucgauCUGCCACCAgGUCCc -3'
miRNA:   3'- cAGGCGG---UAGC----------GGCGGUGGUgCAGGu -5'
16077 3' -61 NC_004065.1 + 225918 0.67 0.735388
Target:  5'- uUCUGCUGUUGCCGCUucCCGuCGUCUc -3'
miRNA:   3'- cAGGCGGUAGCGGCGGu-GGU-GCAGGu -5'
16077 3' -61 NC_004065.1 + 225648 0.7 0.582845
Target:  5'- cUCCGgCuccCGCCGCCGCCgucGCGcUCCAc -3'
miRNA:   3'- cAGGCgGua-GCGGCGGUGG---UGC-AGGU- -5'
16077 3' -61 NC_004065.1 + 222652 0.66 0.814178
Target:  5'- ---gGCCcgCGUcagCGCC-CCACGUCCGa -3'
miRNA:   3'- caggCGGuaGCG---GCGGuGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 221277 0.7 0.544938
Target:  5'- -cCUGCC---GCCGCCACCACGgccUCCGg -3'
miRNA:   3'- caGGCGGuagCGGCGGUGGUGC---AGGU- -5'
16077 3' -61 NC_004065.1 + 218196 0.68 0.65977
Target:  5'- aUCCGuCCGaCcCCGCCACCGacucCGUCCGg -3'
miRNA:   3'- cAGGC-GGUaGcGGCGGUGGU----GCAGGU- -5'
16077 3' -61 NC_004065.1 + 213479 0.66 0.805914
Target:  5'- aGUCggaGCgGUCGCCGCgACCGuCGacgCCAc -3'
miRNA:   3'- -CAGg--CGgUAGCGGCGgUGGU-GCa--GGU- -5'
16077 3' -61 NC_004065.1 + 211955 0.71 0.498759
Target:  5'- -gCgGCgGUCGCUGCCGCCAuCGUCgAg -3'
miRNA:   3'- caGgCGgUAGCGGCGGUGGU-GCAGgU- -5'
16077 3' -61 NC_004065.1 + 210972 0.67 0.757259
Target:  5'- -cUCGUCGUCacagaugugggccaCCGCCGCCGuCGUCCAa -3'
miRNA:   3'- caGGCGGUAGc-------------GGCGGUGGU-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 210617 0.66 0.780312
Target:  5'- cUCCGCCGaCGCCGgCGgguaACGUCCc -3'
miRNA:   3'- cAGGCGGUaGCGGCgGUgg--UGCAGGu -5'
16077 3' -61 NC_004065.1 + 210461 0.66 0.788974
Target:  5'- --aCGCUAcCGCCGCCACCGacacCCAc -3'
miRNA:   3'- cagGCGGUaGCGGCGGUGGUgca-GGU- -5'
16077 3' -61 NC_004065.1 + 210099 0.67 0.725205
Target:  5'- uGUCCGUCGUaaccaCCGCCACCAccgcuacCGUCUu -3'
miRNA:   3'- -CAGGCGGUAgc---GGCGGUGGU-------GCAGGu -5'
16077 3' -61 NC_004065.1 + 209306 0.66 0.788974
Target:  5'- -gCCGUCGUCGCCGUCGgUGcCGUCg- -3'
miRNA:   3'- caGGCGGUAGCGGCGGUgGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 207530 0.66 0.805914
Target:  5'- gGUCCuCC-UCGCCGCgCGcuCCGCGUCg- -3'
miRNA:   3'- -CAGGcGGuAGCGGCG-GU--GGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 207115 0.71 0.507864
Target:  5'- -aCCGCCGacCGCCGCCacugACCGCGUUgGg -3'
miRNA:   3'- caGGCGGUa-GCGGCGG----UGGUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 206393 0.7 0.563807
Target:  5'- cGUCgGcCCGagGCCaGCCGCC-CGUCCAc -3'
miRNA:   3'- -CAGgC-GGUagCGG-CGGUGGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 205965 0.66 0.79751
Target:  5'- -gCCGCUcaUGCUGCCGCCGCucaCCAu -3'
miRNA:   3'- caGGCGGuaGCGGCGGUGGUGca-GGU- -5'
16077 3' -61 NC_004065.1 + 205499 0.73 0.380366
Target:  5'- -gCCGUCGUCGCUGCCGCCGCcaUCUu -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUGc-AGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.