miRNA display CGI


Results 21 - 40 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 205175 0.81 0.140286
Target:  5'- -gCCGCCGUCGCCGCCaacaucgggcGCCGCGUgCGu -3'
miRNA:   3'- caGGCGGUAGCGGCGG----------UGGUGCAgGU- -5'
16077 3' -61 NC_004065.1 + 203672 0.66 0.780312
Target:  5'- -gCCGCCGUCGCCagcGCCgaugacgacgACgACGUCg- -3'
miRNA:   3'- caGGCGGUAGCGG---CGG----------UGgUGCAGgu -5'
16077 3' -61 NC_004065.1 + 203406 0.7 0.563807
Target:  5'- -cCCGCUGUCGCCGCacuCCGacucUGUCCGc -3'
miRNA:   3'- caGGCGGUAGCGGCGgu-GGU----GCAGGU- -5'
16077 3' -61 NC_004065.1 + 203269 0.69 0.621251
Target:  5'- cUCCGUCGUCGUCGUCGuCCACGa--- -3'
miRNA:   3'- cAGGCGGUAGCGGCGGU-GGUGCaggu -5'
16077 3' -61 NC_004065.1 + 200516 0.69 0.621251
Target:  5'- aUCCGaUCGgaUCGCCGCgCACaggGCGUCCAu -3'
miRNA:   3'- cAGGC-GGU--AGCGGCG-GUGg--UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 200055 0.75 0.328631
Target:  5'- -gCCGCCGcCGCCGCCGCCAgcaccgGUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUg-----CAGGu -5'
16077 3' -61 NC_004065.1 + 199965 0.67 0.744563
Target:  5'- -gCCGCCAUCaacgauaaCGCUGCCGCuGUCCu -3'
miRNA:   3'- caGGCGGUAGcg------GCGGUGGUG-CAGGu -5'
16077 3' -61 NC_004065.1 + 199639 0.71 0.517038
Target:  5'- uGUCCGCgAU--CCGCCAggUCACGUCCAu -3'
miRNA:   3'- -CAGGCGgUAgcGGCGGU--GGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 199325 0.68 0.707418
Target:  5'- cGUCCGCCAccUCGaCGUCGCgACGgaCCAg -3'
miRNA:   3'- -CAGGCGGU--AGCgGCGGUGgUGCa-GGU- -5'
16077 3' -61 NC_004065.1 + 199236 0.72 0.428003
Target:  5'- cGUCCGUCAgucgucaUCGUCGgCGuCCGCGUCCGc -3'
miRNA:   3'- -CAGGCGGU-------AGCGGCgGU-GGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 198945 0.68 0.678939
Target:  5'- -gCgGCCAagGCCGCCGCCAUGa--- -3'
miRNA:   3'- caGgCGGUagCGGCGGUGGUGCaggu -5'
16077 3' -61 NC_004065.1 + 198909 0.7 0.573308
Target:  5'- cGUCCaGCCucucgAUCGCgCGCCGCCggGCGUUCu -3'
miRNA:   3'- -CAGG-CGG-----UAGCG-GCGGUGG--UGCAGGu -5'
16077 3' -61 NC_004065.1 + 198631 0.66 0.814178
Target:  5'- cUCCuCCAggUUGCgCGCCACCAggugcagcguguCGUCCGa -3'
miRNA:   3'- cAGGcGGU--AGCG-GCGGUGGU------------GCAGGU- -5'
16077 3' -61 NC_004065.1 + 198450 0.74 0.357541
Target:  5'- -aCCGaCGUCGCCGCguCCGCGUUCGg -3'
miRNA:   3'- caGGCgGUAGCGGCGguGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 198128 0.72 0.428841
Target:  5'- gGUCUGCgagcugguCAUCGCCGCCGCCAUGg--- -3'
miRNA:   3'- -CAGGCG--------GUAGCGGCGGUGGUGCaggu -5'
16077 3' -61 NC_004065.1 + 197713 0.67 0.735388
Target:  5'- --aCGCCGUCGCgGCCGCCGUGagcUUCAc -3'
miRNA:   3'- cagGCGGUAGCGgCGGUGGUGC---AGGU- -5'
16077 3' -61 NC_004065.1 + 197678 0.68 0.658809
Target:  5'- -cUCGCCGUacCGaCCGCCGCUcgacucgACGUCCGa -3'
miRNA:   3'- caGGCGGUA--GC-GGCGGUGG-------UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 197058 0.69 0.630886
Target:  5'- cUCCGUCAUgCuCCGCCGCgACGUCg- -3'
miRNA:   3'- cAGGCGGUA-GcGGCGGUGgUGCAGgu -5'
16077 3' -61 NC_004065.1 + 196450 0.71 0.498759
Target:  5'- cGUCCGCCA-CGCgguagaacuucuCGCgCugCAUGUCCAg -3'
miRNA:   3'- -CAGGCGGUaGCG------------GCG-GugGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 196220 0.66 0.805914
Target:  5'- -cUUGUCcgCGUCGUC-CCACGUCCGc -3'
miRNA:   3'- caGGCGGuaGCGGCGGuGGUGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.