miRNA display CGI


Results 41 - 60 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 195920 0.76 0.258208
Target:  5'- uUCUGCCGgcgcuuuaUCGCCGaUCACCugGUCCAg -3'
miRNA:   3'- cAGGCGGU--------AGCGGC-GGUGGugCAGGU- -5'
16077 3' -61 NC_004065.1 + 195564 0.76 0.276103
Target:  5'- cUCCGCCAUCG-CGCCGCaggauuCGCGUCCc -3'
miRNA:   3'- cAGGCGGUAGCgGCGGUG------GUGCAGGu -5'
16077 3' -61 NC_004065.1 + 195430 0.69 0.650153
Target:  5'- -cCCGCCgcGUCGCCGUCGucggaCAgGUCCGa -3'
miRNA:   3'- caGGCGG--UAGCGGCGGUg----GUgCAGGU- -5'
16077 3' -61 NC_004065.1 + 194819 0.69 0.640522
Target:  5'- --aCGCCGUgGCggugGCCGCCACGUUCu -3'
miRNA:   3'- cagGCGGUAgCGg---CGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 194409 0.73 0.412277
Target:  5'- -cCCGCCGcCGCCGCCGCCGUGgaUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGC--AGGu -5'
16077 3' -61 NC_004065.1 + 193913 0.68 0.697972
Target:  5'- -gCCGCCGgcagcggcccCGuuGCCGCCACGguuguuUCCAc -3'
miRNA:   3'- caGGCGGUa---------GCggCGGUGGUGC------AGGU- -5'
16077 3' -61 NC_004065.1 + 193839 0.67 0.744563
Target:  5'- -aCCGCCAccauUCcugcuGCCGUCGCUuCGUCCGc -3'
miRNA:   3'- caGGCGGU----AG-----CGGCGGUGGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 191858 0.66 0.788974
Target:  5'- -gCCGCUggCGCgGaUCGCCGCGUCUu -3'
miRNA:   3'- caGGCGGuaGCGgC-GGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 186436 0.68 0.697972
Target:  5'- uUCCuaCCGUUGCCGCCGCCGC--CCu -3'
miRNA:   3'- cAGGc-GGUAGCGGCGGUGGUGcaGGu -5'
16077 3' -61 NC_004065.1 + 186157 0.67 0.744563
Target:  5'- -gCCGUgGagGCCGCCACCGaacUCCAc -3'
miRNA:   3'- caGGCGgUagCGGCGGUGGUgc-AGGU- -5'
16077 3' -61 NC_004065.1 + 184488 0.73 0.396114
Target:  5'- -gCUGCCGcCGCCGCCGCgGCG-CCGg -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGgUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 184169 0.72 0.428841
Target:  5'- cUCCGUCGgaGCgGCCAUCGCGUCCc -3'
miRNA:   3'- cAGGCGGUagCGgCGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 184038 0.7 0.573308
Target:  5'- -gCCGCCAcggcgcccaggUCGCCGUuacaCACgGCGUCCu -3'
miRNA:   3'- caGGCGGU-----------AGCGGCG----GUGgUGCAGGu -5'
16077 3' -61 NC_004065.1 + 181927 0.84 0.087794
Target:  5'- -gCCGCCAcCGCCGCCGCCACagGUCCGc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUG--CAGGU- -5'
16077 3' -61 NC_004065.1 + 177527 0.68 0.688476
Target:  5'- -aCCGCCAcCGCgCGCCAacaGCGcCCAa -3'
miRNA:   3'- caGGCGGUaGCG-GCGGUgg-UGCaGGU- -5'
16077 3' -61 NC_004065.1 + 177362 0.72 0.437269
Target:  5'- aUCCGCCAcCGCCaCCGCCAgCGgcggCCAa -3'
miRNA:   3'- cAGGCGGUaGCGGcGGUGGU-GCa---GGU- -5'
16077 3' -61 NC_004065.1 + 175519 0.68 0.669368
Target:  5'- cGUCCGCCGaaagaguaaCGCCGCCaACgAUGUCa- -3'
miRNA:   3'- -CAGGCGGUa--------GCGGCGG-UGgUGCAGgu -5'
16077 3' -61 NC_004065.1 + 174912 0.69 0.640522
Target:  5'- -aCUGUC-UCGgCGCCGCCGCGggcgCCAg -3'
miRNA:   3'- caGGCGGuAGCgGCGGUGGUGCa---GGU- -5'
16077 3' -61 NC_004065.1 + 173890 0.66 0.796662
Target:  5'- -cUCGCCGagGCugcagaaggcgagCGCCGCCGuCGUCCGg -3'
miRNA:   3'- caGGCGGUagCG-------------GCGGUGGU-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 173878 0.67 0.75365
Target:  5'- cGUCaCGCCGUguguguggGCCGCCGCCGCcUCa- -3'
miRNA:   3'- -CAG-GCGGUAg-------CGGCGGUGGUGcAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.