miRNA display CGI


Results 61 - 80 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 173488 0.72 0.45354
Target:  5'- --gCGCCugcgguGUCGCCGCCACUcugaagaaaucucGCGUCCGu -3'
miRNA:   3'- cagGCGG------UAGCGGCGGUGG-------------UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 173394 0.73 0.388187
Target:  5'- -gCCGCgGcCGCUGCCACCGCaUCCAc -3'
miRNA:   3'- caGGCGgUaGCGGCGGUGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 173313 0.73 0.42051
Target:  5'- -gCCGCCGcCGCCGCCGCUGCGg--- -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGCaggu -5'
16077 3' -61 NC_004065.1 + 172571 0.66 0.805914
Target:  5'- --gCGCCAUCGCCaCgACgGCGUCgAa -3'
miRNA:   3'- cagGCGGUAGCGGcGgUGgUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 171877 0.69 0.602008
Target:  5'- cUCCGCCGgcgacgauuUCGCCGCCugCGuCGaUCAa -3'
miRNA:   3'- cAGGCGGU---------AGCGGCGGugGU-GCaGGU- -5'
16077 3' -61 NC_004065.1 + 171440 0.66 0.796662
Target:  5'- cUCCGCCGUCGucggcgagcucauCCGCUggAUCGCG-CCGa -3'
miRNA:   3'- cAGGCGGUAGC-------------GGCGG--UGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 170883 0.67 0.762643
Target:  5'- cUCuCGCCGUCGUCGCC-UCGCGcUCg- -3'
miRNA:   3'- cAG-GCGGUAGCGGCGGuGGUGC-AGgu -5'
16077 3' -61 NC_004065.1 + 170451 0.7 0.544938
Target:  5'- -gCCGCCGgaggcgccuUCGCUGCCGCCGCaGaCCGc -3'
miRNA:   3'- caGGCGGU---------AGCGGCGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 170302 0.72 0.445791
Target:  5'- aGUCCGCgacgGUCGCCGUgCGCCGCGgCCGc -3'
miRNA:   3'- -CAGGCGg---UAGCGGCG-GUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 170256 0.72 0.445791
Target:  5'- -gUgGCCGUgGCCGCCGCCGCcaCCAu -3'
miRNA:   3'- caGgCGGUAgCGGCGGUGGUGcaGGU- -5'
16077 3' -61 NC_004065.1 + 169530 0.66 0.805914
Target:  5'- uUCCGUCGUgcaagaagaCGCCGCCGCC--GUCUc -3'
miRNA:   3'- cAGGCGGUA---------GCGGCGGUGGugCAGGu -5'
16077 3' -61 NC_004065.1 + 168681 0.66 0.771532
Target:  5'- cUCCGUCuUCGCCcggGUCGCCGCGgcucucgCCGu -3'
miRNA:   3'- cAGGCGGuAGCGG---CGGUGGUGCa------GGU- -5'
16077 3' -61 NC_004065.1 + 168501 0.66 0.771532
Target:  5'- -aCUGCgAUCGCCugcgggaugcuGUCGCCGCGUUCu -3'
miRNA:   3'- caGGCGgUAGCGG-----------CGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 168299 0.67 0.734466
Target:  5'- -cCCGCCAaggagcgcauggcUCGCaucCGCCGCUACG-CCGc -3'
miRNA:   3'- caGGCGGU-------------AGCG---GCGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 167937 0.69 0.640522
Target:  5'- -aCCGCCGcUGCCGCUGCCGuCGcCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGU-GCaGGu -5'
16077 3' -61 NC_004065.1 + 167641 0.75 0.301486
Target:  5'- -gCCGCCAccccCGCCGCCACCACcccgCCGc -3'
miRNA:   3'- caGGCGGUa---GCGGCGGUGGUGca--GGU- -5'
16077 3' -61 NC_004065.1 + 167546 0.66 0.805914
Target:  5'- --aCGCUAcCGCCGCgGCCGC-UCCu -3'
miRNA:   3'- cagGCGGUaGCGGCGgUGGUGcAGGu -5'
16077 3' -61 NC_004065.1 + 167374 0.67 0.743649
Target:  5'- -gCUGCCGUCuCCGCCGCCAaugcugcUGUCa- -3'
miRNA:   3'- caGGCGGUAGcGGCGGUGGU-------GCAGgu -5'
16077 3' -61 NC_004065.1 + 164846 0.72 0.471899
Target:  5'- -aCCGCgAUgGCCGCCGCUAUGUUa- -3'
miRNA:   3'- caGGCGgUAgCGGCGGUGGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 164702 0.74 0.342866
Target:  5'- -gCUGCCGcCGCCGCCGCCG-GUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUgCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.