miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 126177 0.74 0.357541
Target:  5'- gGUgCGCgAUCGCCGUCACgGCGUUCu -3'
miRNA:   3'- -CAgGCGgUAGCGGCGGUGgUGCAGGu -5'
16077 3' -61 NC_004065.1 + 195564 0.76 0.276103
Target:  5'- cUCCGCCAUCG-CGCCGCaggauuCGCGUCCc -3'
miRNA:   3'- cAGGCGGUAGCgGCGGUG------GUGCAGGu -5'
16077 3' -61 NC_004065.1 + 133608 0.76 0.288576
Target:  5'- aGUCCGCCGU-GCCGCCGCuCGCGagCGc -3'
miRNA:   3'- -CAGGCGGUAgCGGCGGUG-GUGCagGU- -5'
16077 3' -61 NC_004065.1 + 45206 0.75 0.294976
Target:  5'- -gCCGCCGcUGCCGCCACCGCcaCCGu -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGcaGGU- -5'
16077 3' -61 NC_004065.1 + 113704 0.75 0.301486
Target:  5'- --aCGCCGUCGCCGCUGCCGcCG-CCGa -3'
miRNA:   3'- cagGCGGUAGCGGCGGUGGU-GCaGGU- -5'
16077 3' -61 NC_004065.1 + 97692 0.75 0.314838
Target:  5'- -cUCGCgGUCGCUGCCGCCGCcgcccgggcuGUCCAg -3'
miRNA:   3'- caGGCGgUAGCGGCGGUGGUG----------CAGGU- -5'
16077 3' -61 NC_004065.1 + 149232 0.75 0.314838
Target:  5'- -gCUGCCGcCGCCGCCGCCGcCGUCg- -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 127635 0.75 0.321679
Target:  5'- -aCCGCUcgCGCUGCCGCUGCGgcgCCGa -3'
miRNA:   3'- caGGCGGuaGCGGCGGUGGUGCa--GGU- -5'
16077 3' -61 NC_004065.1 + 164702 0.74 0.342866
Target:  5'- -gCUGCCGcCGCCGCCGCCG-GUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUgCAGGu -5'
16077 3' -61 NC_004065.1 + 159698 0.76 0.276103
Target:  5'- -gCCGCCGUCGCCGCCgauagaacgacgACCACGgagaugauaCCAg -3'
miRNA:   3'- caGGCGGUAGCGGCGG------------UGGUGCa--------GGU- -5'
16077 3' -61 NC_004065.1 + 127930 0.76 0.264066
Target:  5'- gGUCCgGCCAUCGCCGCC--CGCGUCg- -3'
miRNA:   3'- -CAGG-CGGUAGCGGCGGugGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 110425 0.76 0.264066
Target:  5'- cUCCGCCGcCGgCGuCCugCACGUCCAg -3'
miRNA:   3'- cAGGCGGUaGCgGC-GGugGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 124325 0.85 0.071808
Target:  5'- gGUUCGCCGUCGCCGCCAgucCCGgGUCCGa -3'
miRNA:   3'- -CAGGCGGUAGCGGCGGU---GGUgCAGGU- -5'
16077 3' -61 NC_004065.1 + 58063 0.81 0.136919
Target:  5'- cUCCGCCGcCGCCGCCGCCACcGcCCGc -3'
miRNA:   3'- cAGGCGGUaGCGGCGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 109917 0.8 0.154522
Target:  5'- cGUCCGCCGcgGCCGCCGUCGCGUCCc -3'
miRNA:   3'- -CAGGCGGUagCGGCGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 109880 0.79 0.174151
Target:  5'- -aCCGgCGUCGCCGCgGCCGCGUCgGg -3'
miRNA:   3'- caGGCgGUAGCGGCGgUGGUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 17687 0.78 0.195971
Target:  5'- cGUCgCGCCAUCGCCGUgGCCGuCGUCg- -3'
miRNA:   3'- -CAG-GCGGUAGCGGCGgUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 24583 0.78 0.215113
Target:  5'- gGUCCGCgcguguCGUCGCCGCCACCGCcgccgCCGg -3'
miRNA:   3'- -CAGGCG------GUAGCGGCGGUGGUGca---GGU- -5'
16077 3' -61 NC_004065.1 + 124571 0.77 0.225273
Target:  5'- gGUUCGCCGucacguucUCGuCCGUCGCCACGUCCc -3'
miRNA:   3'- -CAGGCGGU--------AGC-GGCGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 93370 0.77 0.252457
Target:  5'- -cCCGcCCGUCGCuCGCCACCAgGaUCCAc -3'
miRNA:   3'- caGGC-GGUAGCG-GCGGUGGUgC-AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.