miRNA display CGI


Results 41 - 60 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 17687 0.78 0.195971
Target:  5'- cGUCgCGCCAUCGCCGUgGCCGuCGUCg- -3'
miRNA:   3'- -CAG-GCGGUAGCGGCGgUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 109880 0.79 0.174151
Target:  5'- -aCCGgCGUCGCCGCgGCCGCGUCgGg -3'
miRNA:   3'- caGGCgGUAGCGGCGgUGGUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 109917 0.8 0.154522
Target:  5'- cGUCCGCCGcgGCCGCCGUCGCGUCCc -3'
miRNA:   3'- -CAGGCGGUagCGGCGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 58063 0.81 0.136919
Target:  5'- cUCCGCCGcCGCCGCCGCCACcGcCCGc -3'
miRNA:   3'- cAGGCGGUaGCGGCGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 124325 0.85 0.071808
Target:  5'- gGUUCGCCGUCGCCGCCAgucCCGgGUCCGa -3'
miRNA:   3'- -CAGGCGGUAGCGGCGGU---GGUgCAGGU- -5'
16077 3' -61 NC_004065.1 + 45206 0.75 0.294976
Target:  5'- -gCCGCCGcUGCCGCCACCGCcaCCGu -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGcaGGU- -5'
16077 3' -61 NC_004065.1 + 113704 0.75 0.301486
Target:  5'- --aCGCCGUCGCCGCUGCCGcCG-CCGa -3'
miRNA:   3'- cagGCGGUAGCGGCGGUGGU-GCaGGU- -5'
16077 3' -61 NC_004065.1 + 199236 0.72 0.428003
Target:  5'- cGUCCGUCAgucgucaUCGUCGgCGuCCGCGUCCGc -3'
miRNA:   3'- -CAGGCGGU-------AGCGGCgGU-GGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 76774 0.73 0.404145
Target:  5'- cGUCCgGCgCAUCGCCGCCGCgACGgcgaacgCUAu -3'
miRNA:   3'- -CAGG-CG-GUAGCGGCGGUGgUGCa------GGU- -5'
16077 3' -61 NC_004065.1 + 96989 0.73 0.396114
Target:  5'- cGUCCGUCG-CGCUGCUGCgACGUCUg -3'
miRNA:   3'- -CAGGCGGUaGCGGCGGUGgUGCAGGu -5'
16077 3' -61 NC_004065.1 + 151387 0.73 0.396114
Target:  5'- aGUCgGCaCGUCGCCcucGCCgACCGCGUUCAc -3'
miRNA:   3'- -CAGgCG-GUAGCGG---CGG-UGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 66773 0.73 0.380366
Target:  5'- --gCGCCggCGCCGCCGCUGCG-CCGa -3'
miRNA:   3'- cagGCGGuaGCGGCGGUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 90181 0.74 0.37265
Target:  5'- cUCCGCCGUCGcCCGCCucCCGgGacUCCAg -3'
miRNA:   3'- cAGGCGGUAGC-GGCGGu-GGUgC--AGGU- -5'
16077 3' -61 NC_004065.1 + 57762 0.74 0.365041
Target:  5'- -aUCGUCGUCGCCGCCGCCGuCGcUCUc -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGU-GC-AGGu -5'
16077 3' -61 NC_004065.1 + 198450 0.74 0.357541
Target:  5'- -aCCGaCGUCGCCGCguCCGCGUUCGg -3'
miRNA:   3'- caGGCgGUAGCGGCGguGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 126177 0.74 0.357541
Target:  5'- gGUgCGCgAUCGCCGUCACgGCGUUCu -3'
miRNA:   3'- -CAgGCGgUAGCGGCGGUGgUGCAGGu -5'
16077 3' -61 NC_004065.1 + 164702 0.74 0.342866
Target:  5'- -gCUGCCGcCGCCGCCGCCG-GUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUgCAGGu -5'
16077 3' -61 NC_004065.1 + 127635 0.75 0.321679
Target:  5'- -aCCGCUcgCGCUGCCGCUGCGgcgCCGa -3'
miRNA:   3'- caGGCGGuaGCGGCGGUGGUGCa--GGU- -5'
16077 3' -61 NC_004065.1 + 149232 0.75 0.314838
Target:  5'- -gCUGCCGcCGCCGCCGCCGcCGUCg- -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 97692 0.75 0.314838
Target:  5'- -cUCGCgGUCGCUGCCGCCGCcgcccgggcuGUCCAg -3'
miRNA:   3'- caGGCGgUAGCGGCGGUGGUG----------CAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.