Results 61 - 80 of 287 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16077 | 3' | -61 | NC_004065.1 | + | 164702 | 0.74 | 0.342866 |
Target: 5'- -gCUGCCGcCGCCGCCGCCG-GUCCc -3' miRNA: 3'- caGGCGGUaGCGGCGGUGGUgCAGGu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 126177 | 0.74 | 0.357541 |
Target: 5'- gGUgCGCgAUCGCCGUCACgGCGUUCu -3' miRNA: 3'- -CAgGCGgUAGCGGCGGUGgUGCAGGu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 85664 | 0.72 | 0.463109 |
Target: 5'- -aCCGCCAgCGCCGUcgaCAUCGCGUaCCAg -3' miRNA: 3'- caGGCGGUaGCGGCG---GUGGUGCA-GGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 164846 | 0.72 | 0.471899 |
Target: 5'- -aCCGCgAUgGCCGCCGCUAUGUUa- -3' miRNA: 3'- caGGCGgUAgCGGCGGUGGUGCAGgu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 76374 | 0.71 | 0.480773 |
Target: 5'- aUCgCGCCggCGCCGCCgcggaugagcucGCCGcCGUCCGa -3' miRNA: 3'- cAG-GCGGuaGCGGCGG------------UGGU-GCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 121235 | 0.71 | 0.496947 |
Target: 5'- -gCCGCCAcgccagguucgaCGCCGCCACCucuAgGUCCAg -3' miRNA: 3'- caGGCGGUa-----------GCGGCGGUGG---UgCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 110193 | 0.71 | 0.498759 |
Target: 5'- -gCCGCgAcgCGCCGCCGCC-CGUCgAg -3' miRNA: 3'- caGGCGgUa-GCGGCGGUGGuGCAGgU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 196450 | 0.71 | 0.498759 |
Target: 5'- cGUCCGCCA-CGCgguagaacuucuCGCgCugCAUGUCCAg -3' miRNA: 3'- -CAGGCGGUaGCG------------GCG-GugGUGCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 146458 | 0.71 | 0.498759 |
Target: 5'- -cCCGCCGUCGCCGuCUACUcCGUgCCc -3' miRNA: 3'- caGGCGGUAGCGGC-GGUGGuGCA-GGu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 131893 | 0.71 | 0.507864 |
Target: 5'- aUgCGCac-CGCCGCCGCCugGUUCGa -3' miRNA: 3'- cAgGCGguaGCGGCGGUGGugCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 478 | 0.72 | 0.454405 |
Target: 5'- aGUCaGCCuccggGCCGCgCGCCGCGUCCGc -3' miRNA: 3'- -CAGgCGGuag--CGGCG-GUGGUGCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 170256 | 0.72 | 0.445791 |
Target: 5'- -gUgGCCGUgGCCGCCGCCGCcaCCAu -3' miRNA: 3'- caGgCGGUAgCGGCGGUGGUGcaGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 198450 | 0.74 | 0.357541 |
Target: 5'- -aCCGaCGUCGCCGCguCCGCGUUCGg -3' miRNA: 3'- caGGCgGUAGCGGCGguGGUGCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 57762 | 0.74 | 0.365041 |
Target: 5'- -aUCGUCGUCGCCGCCGCCGuCGcUCUc -3' miRNA: 3'- caGGCGGUAGCGGCGGUGGU-GC-AGGu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 90181 | 0.74 | 0.37265 |
Target: 5'- cUCCGCCGUCGcCCGCCucCCGgGacUCCAg -3' miRNA: 3'- cAGGCGGUAGC-GGCGGu-GGUgC--AGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 66773 | 0.73 | 0.380366 |
Target: 5'- --gCGCCggCGCCGCCGCUGCG-CCGa -3' miRNA: 3'- cagGCGGuaGCGGCGGUGGUGCaGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 151387 | 0.73 | 0.396114 |
Target: 5'- aGUCgGCaCGUCGCCcucGCCgACCGCGUUCAc -3' miRNA: 3'- -CAGgCG-GUAGCGG---CGG-UGGUGCAGGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 96989 | 0.73 | 0.396114 |
Target: 5'- cGUCCGUCG-CGCUGCUGCgACGUCUg -3' miRNA: 3'- -CAGGCGGUaGCGGCGGUGgUGCAGGu -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 76774 | 0.73 | 0.404145 |
Target: 5'- cGUCCgGCgCAUCGCCGCCGCgACGgcgaacgCUAu -3' miRNA: 3'- -CAGG-CG-GUAGCGGCGGUGgUGCa------GGU- -5' |
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16077 | 3' | -61 | NC_004065.1 | + | 199236 | 0.72 | 0.428003 |
Target: 5'- cGUCCGUCAgucgucaUCGUCGgCGuCCGCGUCCGc -3' miRNA: 3'- -CAGGCGGU-------AGCGGCgGU-GGUGCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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