miRNA display CGI


Results 81 - 100 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 124814 0.71 0.520727
Target:  5'- cGUCCGCCGggCGUCcacgaacagcggcuCCGCCugGUCCAu -3'
miRNA:   3'- -CAGGCGGUa-GCGGc-------------GGUGGugCAGGU- -5'
16077 3' -61 NC_004065.1 + 115196 0.7 0.53558
Target:  5'- aUCCgGCCGUgGCCGCCGCgACGgggcauaccgCCGg -3'
miRNA:   3'- cAGG-CGGUAgCGGCGGUGgUGCa---------GGU- -5'
16077 3' -61 NC_004065.1 + 100001 0.7 0.544
Target:  5'- cUUCGUCGUagcCGCCGCCGCCGuacagcaucgccuCGUCCGc -3'
miRNA:   3'- cAGGCGGUA---GCGGCGGUGGU-------------GCAGGU- -5'
16077 3' -61 NC_004065.1 + 84092 0.7 0.544938
Target:  5'- cUCCGCCGUCcguuucugGUCGCgaCACCaaGCGUCCAu -3'
miRNA:   3'- cAGGCGGUAG--------CGGCG--GUGG--UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 221277 0.7 0.544938
Target:  5'- -cCUGCC---GCCGCCACCACGgccUCCGg -3'
miRNA:   3'- caGGCGGuagCGGCGGUGGUGC---AGGU- -5'
16077 3' -61 NC_004065.1 + 170451 0.7 0.544938
Target:  5'- -gCCGCCGgaggcgccuUCGCUGCCGCCGCaGaCCGc -3'
miRNA:   3'- caGGCGGU---------AGCGGCGGUGGUG-CaGGU- -5'
16077 3' -61 NC_004065.1 + 146030 0.7 0.563807
Target:  5'- aGUCCaUCAUCGCCGaaggCGCCACGaCCGa -3'
miRNA:   3'- -CAGGcGGUAGCGGCg---GUGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 131893 0.71 0.507864
Target:  5'- aUgCGCac-CGCCGCCGCCugGUUCGa -3'
miRNA:   3'- cAgGCGguaGCGGCGGUGGugCAGGU- -5'
16077 3' -61 NC_004065.1 + 146458 0.71 0.498759
Target:  5'- -cCCGCCGUCGCCGuCUACUcCGUgCCc -3'
miRNA:   3'- caGGCGGUAGCGGC-GGUGGuGCA-GGu -5'
16077 3' -61 NC_004065.1 + 196450 0.71 0.498759
Target:  5'- cGUCCGCCA-CGCgguagaacuucuCGCgCugCAUGUCCAg -3'
miRNA:   3'- -CAGGCGGUaGCG------------GCG-GugGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 76774 0.73 0.404145
Target:  5'- cGUCCgGCgCAUCGCCGCCGCgACGgcgaacgCUAu -3'
miRNA:   3'- -CAGG-CG-GUAGCGGCGGUGgUGCa------GGU- -5'
16077 3' -61 NC_004065.1 + 199236 0.72 0.428003
Target:  5'- cGUCCGUCAgucgucaUCGUCGgCGuCCGCGUCCGc -3'
miRNA:   3'- -CAGGCGGU-------AGCGGCgGU-GGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 170256 0.72 0.445791
Target:  5'- -gUgGCCGUgGCCGCCGCCGCcaCCAu -3'
miRNA:   3'- caGgCGGUAgCGGCGGUGGUGcaGGU- -5'
16077 3' -61 NC_004065.1 + 478 0.72 0.454405
Target:  5'- aGUCaGCCuccggGCCGCgCGCCGCGUCCGc -3'
miRNA:   3'- -CAGgCGGuag--CGGCG-GUGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 85664 0.72 0.463109
Target:  5'- -aCCGCCAgCGCCGUcgaCAUCGCGUaCCAg -3'
miRNA:   3'- caGGCGGUaGCGGCG---GUGGUGCA-GGU- -5'
16077 3' -61 NC_004065.1 + 164846 0.72 0.471899
Target:  5'- -aCCGCgAUgGCCGCCGCUAUGUUa- -3'
miRNA:   3'- caGGCGgUAgCGGCGGUGGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 76374 0.71 0.480773
Target:  5'- aUCgCGCCggCGCCGCCgcggaugagcucGCCGcCGUCCGa -3'
miRNA:   3'- cAG-GCGGuaGCGGCGG------------UGGU-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 121235 0.71 0.496947
Target:  5'- -gCCGCCAcgccagguucgaCGCCGCCACCucuAgGUCCAg -3'
miRNA:   3'- caGGCGGUa-----------GCGGCGGUGG---UgCAGGU- -5'
16077 3' -61 NC_004065.1 + 110193 0.71 0.498759
Target:  5'- -gCCGCgAcgCGCCGCCGCC-CGUCgAg -3'
miRNA:   3'- caGGCGgUa-GCGGCGGUGGuGCAGgU- -5'
16077 3' -61 NC_004065.1 + 32001 0.7 0.573308
Target:  5'- -aCCGCCggCGaCCGCgACCGCcUCCGa -3'
miRNA:   3'- caGGCGGuaGC-GGCGgUGGUGcAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.